Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0565 ATGAAGCTTTCAACATCAGGGTTTGGTCAACAGGATCATGAAGGAGGGGAAAAGAAGTGCTTAAATTCGGAGCTATGGCATGCATGCGCAGGGCCCCTTGTGTCCCTCCCTACGGCTGGGACTCGTGTTGTTTATTTCTCTCAGGGCCATAGTGAGCAGGTTGCCGCCACAACTAACAAAGAAGTTGATGGGCACATTCCCAATTATCCCAACTTGCCGCCCCAGCTTATATGTCAGCTGCATAATGTCACAATGCATGCAGATATCGAGACGGATGAAGTGTATGCACAAATGACATTACAGCCTTTGACACCACAAGAGCAAAAGGACACATTTCTGCCGATGGAGTTAGGGATACCGAGCAAACAGCCAACCAATTATTTTTGCAAGACATTGACAGCTAGTGACACTAGCACGCATGGAGGGTTCTCTGTTCCGCGTCGTGCAGCCGAAAAAGTGTTTCCTCCTCTGGATTTTTCTCAGCAACCACCTGCCCAGGAGCTAATTGCTAGAGATCTTCATGATGTTGAGTGGAAATTTAGGCATATATTTCGAGGACAACCTAAACGGCATCTTCTTACCACTGGGTGGAGTGTGTTTGTTAGTGCCAAAAGACTGGTTGCTGGAGATTCTGTTCTTTTTATCTGGAATGAAAAAAATCAGCTTCTTTTGGGAATTCGCCGTGCCATGAGACCACAGACTGTGATGCCTTCATCTGTTTTATCGAGTGACAGCATGCATATTGGACTCCTTGCAGCTGCTGCACATGCTACTGCTACTAATAGCTGTTTCACCGTATTTTATAACCCTAGGGCTAGCCCATCTGAGTTTGTCATCCCTCTTTCAAAATATGTTAAAGCTGTATTTCACACACGTGTTTCAGTAGGGATGCGTTTTCGGATGCTTTTTGAGACTGAAGAATCAAGTGTTCGAAGGTACATGGGTACAATAACTGGACTTAGTGATTTGGATCCAGTTCGGTGGGCAAATTCCCATTGGCGTTCTGTCAAGGTTGGTTGGGATGAGTCAGCCGCTGGTGAGAGGCAACCAAGGGTATCGTTGTGGGAAATTGAGCCTCTAACAACATTTCCCATGTATCCTTCTCTGTTTCCACTCAGACTGAAACGTCCCTGGCATCTCGGGGCCTCCTCATTTCAAGACAACAGAGATGACCCAACTAATGGGTTAATGCTCCTGAGGGGAGGTCCTGGAGAACAGGGTTTACATTCTCTTAATTTCCAAACCGTTGGTATGCTTCCCTGGCTGCAGCAGAGAATGGATCCTACATTGCTTGGAAATGACCAAAACCAGCAATACCATGCCATGTTCGCAGCAGGTTTGCAGAATATAGGAGGAGGTGGTGGAGATCTCCTTAGACAGCAACTTTTGCATTCTCAACAGCCTTTCCAGTATCTCGAACAGTCAGGAAGCCATGATTCACTGCTTCAGCTTCAACAGCAACAGCAGCAAATAATTCAGCAATCAATACCTCCTAACATTCTCCAAGGGCAAACACAGATCTTGACAGAGAATCTACCCCAGCACCTTTTACAGCAGACTATGAACAATCAATCAGAGGAACAGCAGGCAAATGAACAGAGACACCCTTTCAATGATTCTCTTCAGGTTCATGGGAATCTGCTCCATCAGGTGCAGCAGTCTAATGTTTCTTCAACTTCTTTTCCTAGAACAGACATCTTGGAATCAAGTCTCAAGTTCTCAACTTCCAGTAATCCAAGACACAACTTACTGGACAGAAGTGTAAACGCTTCCAATTTCTACCGAACTGAACAGTTACCACAACACCAATCCTCTACTTCAAAGTATGTTCATTCTCAGGTGAATGCTCGCACCAATTCAATGTCTTTTCAAACATATCCTGGAAGGGACAACTCCATAGTGGAGCTAGGGAATTGCAACTCAGATTCCTCGAATCCTACATTGTTTGGTGTGAATATTGATTCTTCATCAGGGCTTCTACTTCCCACTAGTGTTCCTACTCTTGCTTCTCCTTCAGTTGATCCTGACTCATCCTCGATGCCATTGGGAGATTCTACATTCCAAGGTTCTCTCTATGGCGTTGTCCAGGACTCTTCCGAGTTGTTGCAAGGTTCAGGGACAGTTGACCCACCCACCCCTACTCGGACCTTTGTTAAGGTTTACAAGTCGGGTGCGGTTGGGCGCTCATTAGACATCTCCAGGTTCAGCAGCTATCATGAGCTGAGAGAGGAACTTGGTCAGATGTTTGGAATTGAGGGAAAGTTGGAAAACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCGTGGGAGGCATTTGTCAATAACGTATGGTACATTAAGATACTGTCACCTGAGGATTTTCATAAAATGGGGGAGCAGGCTAGTGAATCATTCAGCCCAAATGTGGGTCAAAGAAGTGGTGAACCCGATACCTTCTCGGGTTTACCATCCGTCAGCTCGCTCGAGTATTGA 2511 45.92 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFSQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADIETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRAMRPQTVMPSSVLSSDSMHIGLLAAAAHATATNSCFTVFYNPRASPSEFVIPLSKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGLSDLDPVRWANSHWRSVKVGWDESAAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHLGASSFQDNRDDPTNGLMLLRGGPGEQGLHSLNFQTVGMLPWLQQRMDPTLLGNDQNQQYHAMFAAGLQNIGGGGGDLLRQQLLHSQQPFQYLEQSGSHDSLLQLQQQQQQIIQQSIPPNILQGQTQILTENLPQHLLQQTMNNQSEEQQANEQRHPFNDSLQVHGNLLHQVQQSNVSSTSFPRTDILESSLKFSTSSNPRHNLLDRSVNASNFYRTEQLPQHQSSTSKYVHSQVNARTNSMSFQTYPGRDNSIVELGNCNSDSSNPTLFGVNIDSSSGLLLPTSVPTLASPSVDPDSSSMPLGDSTFQGSLYGVVQDSSELLQGSGTVDPPTPTRTFVKVYKSGAVGRSLDISRFSSYHELREELGQMFGIEGKLENPLRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPEDFHKMGEQASESFSPNVGQRSGEPDTFSGLPSVSSLEY 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2629367 2640464 + Conep10aG0058200.1 Cone10ag0565 446363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0565 836 SUPERFAMILY CAD & PB1 domains 706 789 - -
Cone10ag0565 836 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone10ag0565 836 MobiDBLite consensus disorder prediction 807 836 - -
Cone10ag0565 836 FunFam Auxin response factor 126 230 - -
Cone10ag0565 836 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Cone10ag0565 836 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677(InterPro)
Cone10ag0565 836 Gene3D - 126 230 IPR015300 -
Cone10ag0565 836 CDD B3_DNA 127 228 IPR003340 GO:0003677(InterPro)
Cone10ag0565 836 FunFam Auxin response factor 292 364 - -
Cone10ag0565 836 Gene3D - 292 364 - -
Cone10ag0565 836 FunFam Auxin response factor 711 804 - -
Cone10ag0565 836 ProSiteProfiles PB1 domain profile. 715 799 IPR053793 -
Cone10ag0565 836 Gene3D - 712 804 - -
Cone10ag0565 836 Pfam AUX/IAA family 713 798 IPR033389 -
Cone10ag0565 836 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Cone10ag0565 836 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Cone10ag0565 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 806 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0565 Cone-Chr10:2629367 Cone5ag1564 Cone-Chr5:10893332 2.48E-290 dispersed
Cone10ag0565 Cone-Chr10:2629367 Cone3ag0590 Cone-Chr3:2903718 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44199 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0565 K14486 - csv:101208098 1299.65