Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0573 ATGGGACTAAAGGGACCATTCCCTCCTGCCATACAGAACTGCTCGAGCTTAACGGGCCTAGACCTTTCCAACAATCAGATCTCCGGGCCGATCCCATCCGACATATCCAAACTGATCCCTTTCGTCACGTCCCTTGATCTTTCGTCGAACAATTTATCCGGCTCAATACCTGTGAATCTGGCAAATTGCAGTTATTTGAACTCTCTTAAGCTTGATGATAATGCATTATCAGGCCAAATCCCGCTTGAACTGGGCCAGCTGGACCGGATGAAGACGTTTTCAGTTAAGAACAATTACTTGACGGGCCAGGTTCCACTTTTTAGCGGAGTGAACATTACAGCAAGCAATTATGCGAATAATCTGGGACTTTGTGGGGGGCCTTTGAAAGCTTGTCCTGGTGCTCCTAAGAAATCTCATACCGGAGTCACTGCTGCTGCTGCTGCTGGTGGGGTCACCTTTACTGCTTTCATTGTCGGGATTATTTTGTATTACTTCTCGCGTGGAGCTGTTATCAGGAAGAAGGATGATGATCCGGAAGGTAACAAATGGGCGAAGAGCATTAAAGGGACAAAAGGGATCAAGGTTTCGATGTTTGGGAACTCCATCACCAAAATGAGGTTGAGCGATCTCATGGAAGCTACTAACAGTTTCAGCAAAGACAACATCATAGGAGGTGGAAGAACAGGAACAGTGTACAAGGCACTACTTTCTGATGGCTCTTCCCTCATGATCAAGAGATTACAAGATTCTCAACATTTAGAGAAAGAATTCATATCAGAAATGAACACACTAGGAAGCGTGAGACATAGGAATCTGGTCCCCCTATATGGATTCTGCGTGGCAAAGAGGGAAAGACTTCTAGTCTACAAATACATGGAAAATGGAACACTCTATGACAACCTACATCCATCTGACCCAGAGAGTAAGACCATGGACTGGCCTTTAAGGCTTCGAATTGGGATAGGAACAGCTAAAGGCTTAGCCTGGCTTCACCATAGCTGCAACCCTCGAATCATCCACAGAAACATAAGTTCCAAATGCATTCTCTTGGACCAAGATTTCGAGCCCAAATTATCCGATTTTGGGCTAGCCCGGCTCATGAACCCGATTGATACCCATTTGAGCACGTTTGTGAATGGAGAGTTTGGTGACTTGGGCTATGTTGCTCCAGAATATCCACGCACTTTAATGGCGACTCCAAAAGGTGATGTTTATAGCTTTGGAGTTGTTCTGTTAGAGTTGATAACTGGCGAAAAGGCAACCCATGTGGCTAGTGCTCCAGAAACATTCAAGGGAAGTTTGGTTGAGTGGGTTGATCAGTTGTCAAGTAACTCCCTTTTTCAAACTGCAATTGACAAGTCGTTGCTTGGGAACGGTTATGACGGCGAGCTGTTCCAGTTCCTTAGAGTTGCGTGGAATTGTGTTTCTGCAGCTCCCAAGGAGAGGCCTACCATGTTTGAAGTTTACCAGCTCCTTAGAGCTATCGGGGAGAAGTACCATTTTAGCGCAGATGATGATATCTTAGTGCCTACAAATAATGGCGATTACAATCTTCCGGATGAACTTATTGTCGCTCGAGAAACAGCAGCTGAGGAGCATTGGAGCAAAAATGATCAATGA 1620 45.31 MGLKGPFPPAIQNCSSLTGLDLSNNQISGPIPSDISKLIPFVTSLDLSSNNLSGSIPVNLANCSYLNSLKLDDNALSGQIPLELGQLDRMKTFSVKNNYLTGQVPLFSGVNITASNYANNLGLCGGPLKACPGAPKKSHTGVTAAAAAGGVTFTAFIVGIILYYFSRGAVIRKKDDDPEGNKWAKSIKGTKGIKVSMFGNSITKMRLSDLMEATNSFSKDNIIGGGRTGTVYKALLSDGSSLMIKRLQDSQHLEKEFISEMNTLGSVRHRNLVPLYGFCVAKRERLLVYKYMENGTLYDNLHPSDPESKTMDWPLRLRIGIGTAKGLAWLHHSCNPRIIHRNISSKCILLDQDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYPRTLMATPKGDVYSFGVVLLELITGEKATHVASAPETFKGSLVEWVDQLSSNSLFQTAIDKSLLGNGYDGELFQFLRVAWNCVSAAPKERPTMFEVYQLLRAIGEKYHFSADDDILVPTNNGDYNLPDELIVARETAAEEHWSKNDQ 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2673369 2676252 + Conep10aG0059000.1 Cone10ag0573 446371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0573 539 SUPERFAMILY L domain-like 2 107 - -
Cone10ag0573 539 SUPERFAMILY Protein kinase-like (PK-like) 195 492 IPR011009 -
Cone10ag0573 539 PANTHER RECEPTOR-LIKE PROTEIN 55 3 491 - -
Cone10ag0573 539 Gene3D Phosphorylase Kinase; domain 1 178 291 - -
Cone10ag0573 539 ProSiteProfiles Protein kinase domain profile. 217 492 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0573 539 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 178 291 - -
Cone10ag0573 539 Gene3D Transferase(Phosphotransferase) domain 1 292 510 - -
Cone10ag0573 539 Pfam Leucine Rich Repeat 16 38 IPR001611 GO:0005515(InterPro)
Cone10ag0573 539 Pfam Leucine Rich Repeat 43 63 IPR001611 GO:0005515(InterPro)
Cone10ag0573 539 CDD STKc_IRAK 223 492 - -
Cone10ag0573 539 Gene3D Ribonuclease Inhibitor 2 140 IPR032675 -
Cone10ag0573 539 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 8 131 - -
Cone10ag0573 539 Pfam Protein tyrosine and serine/threonine kinase 220 490 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0573 539 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 292 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0573 Cone-Chr10:2673369 Cone11ag0141 Cone-Chr11:632792 4.36E-129 dispersed
Cone10ag0573 Cone-Chr10:2673369 Cone3ag0598 Cone-Chr3:2962451 2.34e-316 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81820 PF00069 Pkinase 5.40E-36 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0573 - - - 0.0