Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0587 ATGGCGGAGGGGCAGTTTACATCAGTTTTAGCTCGTAAGCTAAAGCTTGAGCTTTTTCTACTACTCTCGCTTTCTCTTTTGATTCATCTTTCGCTTGCTGAGATCATTTTTGAAGAGCGATTTGAAGATGGTTGGCAAAGCCGTTGGGTGAAGTCCGACTGGAAAAGGACTGAGGGAAAAGCTGGCTCCTTTAAGCACACAGCCGGCAAGTGGTCTGGAGATCCTGATGACAAAGGCATTCAGACTTCTACAGATGCCAAACATTATGCAATATCTGCAAAAATACCAGAGTTTAACAATAAGAACAGAACATTAGTCCTACAATACTCTATCAAGTTTGAGCAAGAGATTGAATGTGGTGGTGGTTATATTAAGCTTCTCTCTGCCTTCGTCAATCAAAAGAAATTTGGTGGGGACACTCCTTACAGCTTAATGTTTGGACCAGATCTATGTGGAACACAGACGAAGAAGCTTCATGTTATTCTCTCATACCAGGGCCAGAATTACCCAATCAAGAAGGATTTGGAATGTGAAACAGACAAGTTAACTCATTTCTACACTTTTATACTTAGGCCAGATGCAAGTTACAGCATTCTCATTGATAACAGAGAGAGGGATTCTGGAAGTATGTATACTGACTGGGATATTCTTCCCCCACGAAAACTCAAGGACACTAAAGCCAAAAAGCCTGCTGACTGGGATGATAGGGAATATATTGAAGATCCTAATGATGTCAAGCCGGAGGGATATGATTCAATTCCGAAAGAAATTCCTGACCCAAAAGCAAAAGAGCCTGATAGTTGGGATGATGAAGAGGATGGTATATGGAGAGCTCCAAATATACCAAATCCGGCATATAAAGGACCATGGAAACGCAAGAAAATCAAGAATCCAAATTATAAAGGGAAATGGAAGACACCATGGATCGACAATCCAGAGTTTGAAGATGATCCTGACCTCTATGTTCTTAAGCCAATAAAATATGTTGGCATTGAAGTATGGCAGGTCAAGGCAGGTTCTGTTTTCGATAACGTTTTGATTTGTGATGATCCAGAGTATGCTAAACAAGTTGTGGAGGAAGTGTTCTCGAATAGGGCGACAGAAAAGGAGGCTTTTGAGGAAGCAGAGAAAGTGAGAAAAGCACAAGAGGAAGAGGAAGCTCAAAGAGCAAGAGAAGAGGGTGAAAGGAGGAGACGTGAGAGGGGTCATGATCGCCGATACCGAGATAAATATAGAGACAGATACAGAAAGGATTACATGGATGATTATCATGATGAGCTCTAG 1284 41.59 MAEGQFTSVLARKLKLELFLLLSLSLLIHLSLAEIIFEERFEDGWQSRWVKSDWKRTEGKAGSFKHTAGKWSGDPDDKGIQTSTDAKHYAISAKIPEFNNKNRTLVLQYSIKFEQEIECGGGYIKLLSAFVNQKKFGGDTPYSLMFGPDLCGTQTKKLHVILSYQGQNYPIKKDLECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKLKDTKAKKPADWDDREYIEDPNDVKPEGYDSIPKEIPDPKAKEPDSWDDEEDGIWRAPNIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVFDNVLICDDPEYAKQVVEEVFSNRATEKEAFEEAEKVRKAQEEEEAQRAREEGERRRRERGHDRRYRDKYRDRYRKDYMDDYHDEL 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2752731 2758394 + Conep10aG0060400.1 Cone10ag0587 446385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0587 427 FunFam Calreticulin 219 320 - -
Cone10ag0587 427 Pfam Calreticulin family 37 273 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 Pfam Calreticulin family 274 347 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 ProSitePatterns Calreticulin family signature 2. 144 152 IPR018124 GO:0005509(InterPro)
Cone10ag0587 427 Gene3D Calreticulin/calnexin, P domain 219 320 IPR009033 GO:0005509(InterPro)|GO:0005515(InterPro)
Cone10ag0587 427 PANTHER CALRETICULIN AND CALNEXIN 19 393 IPR001580 GO:0005509(PANTHER)|GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006457(InterPro)|GO:0006457(PANTHER)|GO:0030433(PANTHER)|GO:0051082(InterPro)
Cone10ag0587 427 MobiDBLite consensus disorder prediction 225 276 - -
Cone10ag0587 427 PRINTS Calreticulin signature 328 348 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 PRINTS Calreticulin signature 257 279 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 PRINTS Calreticulin signature 229 242 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 PRINTS Calreticulin signature 295 314 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 PRINTS Calreticulin signature 114 132 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 PRINTS Calreticulin signature 140 156 IPR001580 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 MobiDBLite consensus disorder prediction 225 280 - -
Cone10ag0587 427 Coils Coil 364 400 - -
Cone10ag0587 427 PIRSF Calreticulin 13 426 IPR009169 GO:0005509(InterPro)|GO:0005783(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cone10ag0587 427 FunFam Calreticulin 1b 34 216 - -
Cone10ag0587 427 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 232 IPR013320 -
Cone10ag0587 427 ProSitePatterns Calreticulin family signature 1. 112 127 IPR018124 GO:0005509(InterPro)
Cone10ag0587 427 SUPERFAMILY P-domain of calnexin/calreticulin 215 330 IPR009033 GO:0005509(InterPro)|GO:0005515(InterPro)
Cone10ag0587 427 MobiDBLite consensus disorder prediction 368 405 - -
Cone10ag0587 427 Gene3D - 34 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0587 K08057 - - vvi:100265011 692.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0587 Cone-Chr10:2752731 Cone15ag0636 Cone-Chr15:3329647 3.16E-200 dispersed
Cone10ag0587 Cone-Chr10:2752731 Cone3ag0614 Cone-Chr3:3042319 2.45E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g884 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0587 Cone3ag0614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g00219 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008608 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 1 2 1 2 35