Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0603 ATGGAAGAGGAGAAGATTGAGGACCATGAACAGGTTCTAGAAGGTGGGATATGGAGTTCGTGTTCAGTGGTGGGTAAGAGTGGAGGGGGAAGCTTTGTAGAGAGAAGGGCAGCTAAGTTTGGAAGTGGGTTCAATGCGCCTAGGATCAATACGCCCAGGTTTCGAACCACTAGCCCGTTGGTCTCACCTGCGGCTCATTCTCCTCGTATTACTATTCCGCCTGGCATTAGCCCCACTGCCTTGCTTGATTCGCCTATCATGCTCCCTAATAGACAGGCTCTTCCATCTCCTACGACCGGAACTTATTGTATCCCTTTAAATGATCAATGCTCGATCCGAAATTCTATGCTACTTGAAGATGGATATAAGGGGAGTCCTGTAGATGGTTCATCCTTCAGATTGAAGCCTCCTGACGAGCACAATTTCGCCCCTGGATTTTCTGGTTATCAAACTCAGGATGTTCTTGATATTGATTATCAGGATCTTATATCAAAGCAACCGCCTATCGACTTTGAATTCTCTGTTCAATATCCGAAAGAAGCTACTGCAGTAAGCTGTGCAGGAGATTCATCTACTGATACTAACAACTTCAACGACGCGATATTATATAATACTAAACCAGATGAAGTTCAAGCGCATATTCTTAATCAAGTTTTTAATCGAACATCTCTTCCCAATGAATGCATTCAAGGTGAGGATAATGAACCACATCATCATCAACCCGATCAGAACATTTACCCATCCTCTTCAGGACTAGCAAGGAATTCAGAAGATGGATATAACTGGAGAAAATACGGACAAAAACAAGTAAAAGGAAGCGAATATCCAAGAAGCTACTATAAATGTACTCATCCAAATTGCCAAGTGAAGAAGAAAGTGGAAAGATCCCTTGATGGTCAAATAACCGAAATCATATACAAAGGCACTCACAGTCATGCAAAACCTCACCCATGTCGCCGGGCCCCATCCGGATCGACGTTTCCATCTGACCAGGCTTCAGAGGTGGGTGAAGGAAGTAGGACCTATGTCAAAGCAGAAGGTGGGCCTGTCTGGATGAGTATTCAATCTGATTTGAGGGGTGATGGGTTGGAAAGGGGGACCCCCTCGGCTTCTGTTGTAACTGATGTTTCTGATCCGTTATTGACTGCTCAAGGGAAATCTATTGGGTTGTTTGGATCCGTTCAAACTCCTGAGCTTACTTCTACTGTTGCTAGTCATGAAGATGATGATGATGGGGCCACTCAGGGAAGTGTATCATTCAGTGATGATGCTGATGATGTAGAATCTGAATCAAAAAGAAGGCGGATGGAGACCTGTCAGATTGAAACAAATTTGGCGTCTAGATCTGTCAGAGAACCAAGAGTTGTTGTCCAAATAGAGACTGAAATAGACATTCTTGATGATGGTTACCGCTGGAGAAAATACGGGCAAAAAGTCGTCAAAGGAAACCCTAATCCTAGGAGCTACTACAAATGCACAAGTCCTGGATGTTTAGTTAGAAAGCACGTAGAGCGGGCCCCGCACGATCTCAAATTCGTGATCACAACATATGAAGGAAAACACAACCATGAGGTGCCTGCTGCTAGAAACAGCAACCAAATAAATTCAAGCGGCAATGGTGATAATGCAAACCATTCTGCTGTTTCCTGTCAGTCATCCGTGACCTTACCTAGAAGCTCTACCATTCCTTTGCCCGATCAAACCCATATTCCGGACCCCACAACTTATTTTGAACATAAACCTGAATTTAACGACGAGTATTTGAGATCAGGTATTCTCGGGAGTTTTAGTAATGACATGAAAATGGGGACTCCATTCATGTTTCAAATGAAGCTTCCTTCCTTGCAGAATACTGTGTCTTATGGCTCATTTGGAATAAACGTGGGTTCTTTGGTACCGGGGATTCAGGATTTTCCTGTTTCTCTGCCATTAAATCCTCCTCCGATGCGAAACTATTCAATGGCTGAATTTAATTTTAACAGCGGAAGATCAATGGCTCAGATGCAGCCGTTTATGACCAGGCAGCAGATGAGGGAGAATGAGGTCAGGTATCTAAAGCTCAAACAAGAACAGGATGATAATGTTTATGATGCTTGTTCATCAACGGTGGGGCATCATCAACAAATCATGGGAAAGCTTCCCTAG 2145 43.68 MEEEKIEDHEQVLEGGIWSSCSVVGKSGGGSFVERRAAKFGSGFNAPRINTPRFRTTSPLVSPAAHSPRITIPPGISPTALLDSPIMLPNRQALPSPTTGTYCIPLNDQCSIRNSMLLEDGYKGSPVDGSSFRLKPPDEHNFAPGFSGYQTQDVLDIDYQDLISKQPPIDFEFSVQYPKEATAVSCAGDSSTDTNNFNDAILYNTKPDEVQAHILNQVFNRTSLPNECIQGEDNEPHHHQPDQNIYPSSSGLARNSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLDGQITEIIYKGTHSHAKPHPCRRAPSGSTFPSDQASEVGEGSRTYVKAEGGPVWMSIQSDLRGDGLERGTPSASVVTDVSDPLLTAQGKSIGLFGSVQTPELTSTVASHEDDDDGATQGSVSFSDDADDVESESKRRRMETCQIETNLASRSVREPRVVVQIETEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCLVRKHVERAPHDLKFVITTYEGKHNHEVPAARNSNQINSSGNGDNANHSAVSCQSSVTLPRSSTIPLPDQTHIPDPTTYFEHKPEFNDEYLRSGILGSFSNDMKMGTPFMFQMKLPSLQNTVSYGSFGINVGSLVPGIQDFPVSLPLNPPPMRNYSMAEFNFNSGRSMAQMQPFMTRQQMRENEVRYLKLKQEQDDNVYDACSSTVGHHQQIMGKLP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2835417 2838930 + Conep10aG0062000.1 Cone10ag0603 446401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0603 714 SUPERFAMILY WRKY DNA-binding domain 459 526 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 FunFam WRKY transcription factor 246 316 - -
Cone10ag0603 714 Pfam WRKY DNA -binding domain 467 524 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 Pfam WRKY DNA -binding domain 257 312 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 MobiDBLite consensus disorder prediction 309 338 - -
Cone10ag0603 714 ProSiteProfiles WRKY domain profile. 461 526 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 SMART WRKY_cls 256 314 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 SMART WRKY_cls 466 525 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 ProSiteProfiles WRKY domain profile. 257 315 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 FunFam WRKY transcription factor 57 452 526 - -
Cone10ag0603 714 MobiDBLite consensus disorder prediction 402 435 - -
Cone10ag0603 714 Gene3D WRKY domain 248 316 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 MobiDBLite consensus disorder prediction 227 253 - -
Cone10ag0603 714 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 226 539 IPR044810 GO:0003700(InterPro)
Cone10ag0603 714 SUPERFAMILY WRKY DNA-binding domain 256 315 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 Gene3D WRKY domain 453 519 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0603 714 MobiDBLite consensus disorder prediction 526 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0603 Cone-Chr10:2835417 Cone14ag1277 Cone-Chr14:10214634 1.78E-109 dispersed
Cone6ag0843 Cone-Chr6:4302580 Cone10ag0603 Cone-Chr10:2835417 1.27E-14 dispersed
Cone10ag0603 Cone-Chr10:2835417 Cone3ag0629 Cone-Chr3:3107909 0 wgd
Cone10ag0603 Cone-Chr10:2835417 Cone5ag0939 Cone-Chr5:4013009 2.14E-152 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44201 PF11221 Med21 3.20E-19 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0603 K18835 - mdm:103451420 735.717