Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0605 ATGAATTTCGACGGCAGAATTTCAATGTCCTTAGCTACTATGTCGAAGGGAATCTCCTCCGCCCTCTCACCGTCGTTGAGCGAAGATGCACTGTGGCAAATGAACTTGAGAGCAGGTGAAACGATGGAATCTGGTCAATATCCTGAGCGTCCTGGAGAGCCAGATTGTTCTTATTACATCAGAACAGGCTTGTGTAGATTTGGGGCGACATGTCGATTTAATCATCCGCCTGATAGAAAGCTGGCTATTGCCACGGCAAGGATGAAGGGGGAGTACCCAGAAAGGATTGGACAGCCAGAATGTCAGTACTATATGAAGACAGGCACGTGCAAGTTCGGAGCAACATGCAAGTTTCATCATCCTAGAGAAAAAGCTGGGGTTGCCTTGAATATTTTCGGCTACCCACTTCGCAAGAATGAAGCTGAATGTGCATATTATTCAAGAACTGGGCAGTGCAAGTTTGGAAGCACATGTAAATTCCACCATCCTCAACCAACTAATATGACGGTCTCACTTCGTGGATCTCCTGCATTCCCAACTGCCCAATCTCCATCTACATCTAATCAGCATTCATATCATGGAGGACCGTCTTTTATTCCTAGCCCAAGGTGGCAGGGCTCTTCTAGTTATGCACCTCTAGTCATACCTCAAGGAATGGTTTCAGTGTCAGGTTGGAATGCTTACAGTCCAGGATCAATGCCATCATCAGAACAAACAGGAGGAAACAATCAGATTTATGGAACTTCAAACCAGAGCGAACTGGCAAATCCATTACAAGCAGCTCTATCTCCATTCTCCTCTGGCTCTGTCCCTGTAGGCTTTTATGCATTACAGAGAGCGAATGTATTTCCTGAAAGACCCGGCCAGCCAGAATGTCAGTTCTACATGAAAACTGGAGATTGCAAATTTGGTGCAGTTTGTCGTTTCCATCATCCAAGAGACAGAGTACTTCCTCCTCCAGATTGCATCTTGAGTCCCCTTGGCCTTCCTTTACGTCCGGGAGAACCCTTGTGTGTTTTCTATTCGCAATATGGAATCTGCAAATTTGGTCCAAGCTGCAAATTTGACCATCCCATGGGAATATTGGCACAAGATCTATCTGCGTCCTCCTCAGCCGATGACCTGGGCCCTGTTTTTTTGAGTTCTTCCGGAACTACTGCCTTAAATTTTTCAAATGAGGCTCTGGTCGAAGCGGTTTCTGTAAAGACTAGACGGCTTTCACTCTCTGAGACTAGACAGATGCTTTCTGATGAGGACGATATTGATGATACAGAGAGCTGA 1281 45.82 MNFDGRISMSLATMSKGISSALSPSLSEDALWQMNLRAGETMESGQYPERPGEPDCSYYIRTGLCRFGATCRFNHPPDRKLAIATARMKGEYPERIGQPECQYYMKTGTCKFGATCKFHHPREKAGVALNIFGYPLRKNEAECAYYSRTGQCKFGSTCKFHHPQPTNMTVSLRGSPAFPTAQSPSTSNQHSYHGGPSFIPSPRWQGSSSYAPLVIPQGMVSVSGWNAYSPGSMPSSEQTGGNNQIYGTSNQSELANPLQAALSPFSSGSVPVGFYALQRANVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRDRVLPPPDCILSPLGLPLRPGEPLCVFYSQYGICKFGPSCKFDHPMGILAQDLSASSSADDLGPVFLSSSGTTALNFSNEALVEAVSVKTRRLSLSETRQMLSDEDDIDDTES 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2840936 2844946 + Conep10aG0062200.1 Cone10ag0605 446403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0605 426 Gene3D - 126 173 - -
Cone10ag0605 426 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872(InterPro)
Cone10ag0605 426 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872(InterPro)
Cone10ag0605 426 SUPERFAMILY CCCH zinc finger 290 315 IPR036855 GO:0046872(InterPro)
Cone10ag0605 426 Gene3D - 284 370 - -
Cone10ag0605 426 Gene3D - 49 125 - -
Cone10ag0605 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 77 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 359 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 313 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 SUPERFAMILY CCCH zinc finger 55 78 IPR036855 GO:0046872(InterPro)
Cone10ag0605 426 PANTHER PROTEIN PHOSPHATASE RELATED 28 360 IPR050974 GO:0003729(PANTHER)
Cone10ag0605 426 ProSiteProfiles Zinc finger C3H1-type profile. 332 360 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 SMART c3hfinal6 95 122 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 SMART c3hfinal6 286 313 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 SMART c3hfinal6 137 164 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 SMART c3hfinal6 332 359 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 SMART c3hfinal6 50 77 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872(InterPro)
Cone10ag0605 426 FunFam Zinc finger nuclease 2 49 126 - -
Cone10ag0605 426 SUPERFAMILY CCCH zinc finger 335 359 IPR036855 GO:0046872(InterPro)
Cone10ag0605 426 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0605 Cone-Chr10:2840936 Cone18ag0696 Cone-Chr18:3717195 2.71E-42 dispersed
Cone1ag1687 Cone-Chr1:57933628 Cone10ag0605 Cone-Chr10:2840936 1.04E-121 wgd
Cone10ag0605 Cone-Chr10:2840936 Cone3ag0631 Cone-Chr3:3113517 7.57E-190 wgd
Cone10ag0605 Cone-Chr10:2840936 Cone5ag0933 Cone-Chr5:3992290 1.00E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44202 PF00004 AAA 7.60E-43 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0605 - - - 0.0