Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0612 ATGGCATCGGTGTTGTTATACCATGTGGTGGGAGATCTGACGGTGGGAAAACCGGAGATGGTAGAATTGTGTGAAACAGACTCGGTGGACACAGCCATTAGAGTGATCGGAGAATCTACAGAAGGTGGGATTCCGATTTGGAAGAGAAAATCTCATCTGGGGATGATCGAAACGAGTGAAATGAGGCAACAGAGGTTTGTGGGTATTCTCAATTCGTTAGATATTGTTGCTTTCTTGGCAAGAAATGAGTGTTTAGAGGATCAGGATAAGGCCATGAAGACCCATGTTTCTGAGGTGGTTGTTCCTAACAATTCCTTGTTGAGGCAGGTTGATCCTGGAACGAGATTGATAGACGCACTGGAAATGATGAAGCAGGGAGTGAGGCGACTCCTTGTCCGGAAGAGTGTAGGATGGAAAGGAATGAGCAAGCGATTCTCCATTCTCTACAATGGAAAGTGGCTCAAAAACCTCGACAACAACCTCTCCTCCCCTAATGCCGTCACCACCACCACAGGCAGCGGCAGTAACAGCAATAACAATCTCCTCCTCCCATCTAACAACCAGATCCGCCCTTCCACCTCCTCCACCTCATCATTGGGCCGTGACAAGTTCTGTTGCCTCTCAAGAGAAGATGTAATTCGTTTCCTCATTGGCTGTCTCGGAGCCCTGGCCCCACTCCCTCTCTCCACCATAGCCACACTCGGGATTATCAACCCTAACTACTCCCTCCTTGACGCCTCTTCCCCAGCAATCGAAGTGACCGAGAAACTCCCCCATGACCCTAGCGCTATTGCGATCGTCGAAAACACATTCGATGGTCAAATAAAAATAATTGGAGAAATCTCTTCCTCCAAATTGTGGAAATGCAACTACCTGGCCGCAGCTTGGGCTCTGGCTAATCTTTCTGCCGGGCAGTTTGTTATGGGGGTGGAAGATATCGTCGGCTCGAGGTCTCTACCAGAACATTTCGGAAATGAAAATGTGGGCAGCAGCAATAACAACAACAACAACAATGGCAATGAGTCCAATAGTGGTGGTCTGGGGTCCATGAGACTGAGGAAGTTTAGTAGTAGGAGCATTGGGTTTAATCCTGCAAACACGGGATTTGGGGTTAGCCGGAGTATGATGTATAGGGGAAGAAGTGCACCGTTGACTTGTAAGGTTACAAGCTCATTGGCTGCTGTGATGGCTCAGATGCTTTCTCATAGGGCCACCCATGTTTGGGTTACCGAGGATGATAGTGAAGATGTCTTGGTTGGGGTTGTGAGTTATGCTGAGATTTTGGTCGCTGTGACTAAGCATCCTAGTAGTTTTATTCCGGCAAATCGGTCTGTGGAAGGGTTTGGAAAGGATGTCCAAAATTGA 1365 48.06 MASVLLYHVVGDLTVGKPEMVELCETDSVDTAIRVIGESTEGGIPIWKRKSHLGMIETSEMRQQRFVGILNSLDIVAFLARNECLEDQDKAMKTHVSEVVVPNNSLLRQVDPGTRLIDALEMMKQGVRRLLVRKSVGWKGMSKRFSILYNGKWLKNLDNNLSSPNAVTTTTGSGSNSNNNLLLPSNNQIRPSTSSTSSLGRDKFCCLSREDVIRFLIGCLGALAPLPLSTIATLGIINPNYSLLDASSPAIEVTEKLPHDPSAIAIVENTFDGQIKIIGEISSSKLWKCNYLAAAWALANLSAGQFVMGVEDIVGSRSLPEHFGNENVGSSNNNNNNNGNESNSGGLGSMRLRKFSSRSIGFNPANTGFGVSRSMMYRGRSAPLTCKVTSSLAAVMAQMLSHRATHVWVTEDDSEDVLVGVVSYAEILVAVTKHPSSFIPANRSVEGFGKDVQN 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2904626 2907857 - Conep10aG0062900.1 Cone10ag0612 446410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0612 454 Gene3D - 351 437 IPR046342 -
Cone10ag0612 454 ProSiteProfiles CBS domain profile. 376 438 IPR000644 -
Cone10ag0612 454 Pfam CBS domain 382 431 IPR000644 -
Cone10ag0612 454 Gene3D - 8 141 IPR046342 -
Cone10ag0612 454 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 17 434 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cone10ag0612 454 SUPERFAMILY CBS-domain pair 6 135 IPR046342 -
Cone10ag0612 454 MobiDBLite consensus disorder prediction 324 348 - -
Cone10ag0612 454 SUPERFAMILY CBS-domain pair 382 434 IPR046342 -
Cone10ag0612 454 CDD CBS_pair_SF 25 148 - -
Cone10ag0612 454 MobiDBLite consensus disorder prediction 165 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0612 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0612 Cone-Chr10:2904626 Cone6ag0134 Cone-Chr6:656735 7.72E-24 dispersed
Cone10ag0612 Cone-Chr10:2904626 Cone3ag0639 Cone-Chr3:3169650 1.37E-270 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g834 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0612 Cone3ag0639 . . . . . . . . . . . . . . . . . . Car05g00708 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004318 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 42