Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0616 ATGAAGATCGTACGAAAAGATTATATACCGCATGGACCTGGAAGCGTTAAGATGGTGCCGGTTGATGCGGATGATCTGTGGTTTGCTTTCAATTTGATTGCTCCAGGAGATTCAGTCATGGCTGTCACGGTAAGGAAAGTGCTTAGAGAAAAAGCTGCTGGTGGAAGGGATGCAGAGCGTGTGAAGCTCAAGCTGGAAATTAAAGTTGAAGAGGTGCCAGATTATGACAAAGTGGGATCTATTTTGCGCATACGTGGTAAAAATATCTTGGAGAATGACCATGTAAAGATAGGGGCATTCCACACGTTGGAGTTGGAGCTTAACCGACCATTTGTCTTGAGAAAGGATGTTTGGGACTCTTTGGCTCTGGAAGTACTCCATCAAGCGTCAGATCCTGCTGCAAGTGCAGATCTATCTGTGGTTTTAATGCAAGAAGGATTAGCTCATGTCCTCCTTGTTGGTAAAAGTATGACGATTACACGCGCCCGAATAGAAACTTCAATTCCTCGCAAGCATGGCCCTGCTATTGCTGGTTATGAGACGGCCTTGAATAAATTCTTTGAGAATGTTTTACAGGCTTTCCTGAAACATGTTGATTTCAACGTTGTCCGGTGTGCAGTGATCGCAAGTCCGGGTTTTACTAAGGATCAGTTTCATCGACACTTACTGTTGGAGGCAGAAAGAAGACAGTTGAGACCTATTATTGAGAATAAGTCACGCATAATTTTAGTGCACACAAGTTCAGGGTACAAGCATAGTTTGAGAGAGGTTTTGGATGCTCCAAATGTCATGAATATGATAAAGGATACCAGAGCAGCACAAGAGGTGCAAGTTCTAAAGGATTTCTTCAACATGCTCTCAAATGACCCAGAGCGTGCGTGCTATGGCCCAAAGCATGTAGAGGTTGCTCACGAACGAATGGCTGTGCAAACACTTCTCATCACGGATGATCTCTTTAGGAATGCTGATATATCAGTACGGCAAAAGTATGTCAATTTGGTTGACTCGGTCAAGAGATCAGGTGGCACTGTTCATATTTTTTCATCTCTGCATGTGTCTGGAGAAGAACTAGCACAAATAACTGGAATTGCAGCGATCCTACGGTTTCCACTACCAGACTTGGAAGATATTGAGATGTAA 1140 43.51 MKIVRKDYIPHGPGSVKMVPVDADDLWFAFNLIAPGDSVMAVTVRKVLREKAAGGRDAERVKLKLEIKVEEVPDYDKVGSILRIRGKNILENDHVKIGAFHTLELELNRPFVLRKDVWDSLALEVLHQASDPAASADLSVVLMQEGLAHVLLVGKSMTITRARIETSIPRKHGPAIAGYETALNKFFENVLQAFLKHVDFNVVRCAVIASPGFTKDQFHRHLLLEAERRQLRPIIENKSRIILVHTSSGYKHSLREVLDAPNVMNMIKDTRAAQEVQVLKDFFNMLSNDPERACYGPKHVEVAHERMAVQTLLITDDLFRNADISVRQKYVNLVDSVKRSGGTVHIFSSLHVSGEELAQITGIAAILRFPLPDLEDIEM 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2939379 2945077 + Conep10aG0063300.1 Cone10ag0616 446414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0616 379 NCBIfam mRNA surveillance protein pelota 3 371 IPR004405 GO:0070481(InterPro)|GO:0070966(InterPro)|GO:0071025(InterPro)
Cone10ag0616 379 FunFam Protein pelota homolog 1 132 - -
Cone10ag0616 379 Pfam eRF1 domain 2 138 269 IPR005141 -
Cone10ag0616 379 SUPERFAMILY L30e-like 265 371 IPR029064 -
Cone10ag0616 379 Pfam eRF1 domain 3 273 371 IPR005142 -
Cone10ag0616 379 FunFam Protein pelota homolog 271 379 - -
Cone10ag0616 379 FunFam Protein pelota homolog 137 270 - -
Cone10ag0616 379 SUPERFAMILY Translational machinery components 134 272 - -
Cone10ag0616 379 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 130 IPR038069 -
Cone10ag0616 379 Gene3D eRF1 domain 2 137 270 IPR042226 -
Cone10ag0616 379 Gene3D Pelota, domain A 1 133 IPR038069 -
Cone10ag0616 379 PANTHER PELOTA 1 377 IPR004405 GO:0005737(PANTHER)|GO:0032790(PANTHER)|GO:0070481(InterPro)|GO:0070651(PANTHER)|GO:0070966(InterPro)|GO:0070966(PANTHER)|GO:0071025(InterPro)
Cone10ag0616 379 Pfam eRF1 domain 1 1 129 IPR005140 -
Cone10ag0616 379 Gene3D - 271 379 IPR029064 -
Cone10ag0616 379 SMART eRF1_1_2 1 131 IPR005140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0616 K06965 - - csv:101218528 685.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0616 Cone-Chr10:2939379 Cone3ag0656 Cone-Chr3:3291232 2.02E-266 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g821 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0616 Cone3ag0656 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003303 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 2 15 1 49