Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0625 ATGGAAGCAAGAGCTATGGATTTGAAGAAGGAATTGCAGAGACTGGTGAAGGTAATTGTTGAAGCAGACGACGATGGTTATGCGATCGAAACGCTGGAGGAGGTCATGAAGACGTTGTCTGCTTTGATGAAATTGAAATCCAAGAAATCTTCTTCTGATTTGGAAGTTCCTGAAGAATTCAAATGCCCCATTTCCAAGGAGTTGATGATAGACCCTGTTATCGTGTCCACTGGCCAGACTTATGATCGGCCCTTCATCCAAAGCTGGCTAAAGGAACATGGCCAAAGAACCTGTCCTAAAACTAAACAAGTCCTATCCTATTCCCTTCTCACCCCTAACTACCTCGTCCGAGAAATCATCTCCCGGTGGTGCAAGGACCACGGCATCGATCATCTAATTCCAACCACTTCTTCCGCTGACGAACCAGATGACACAGCCCTGACCAAATTCGACCGGACAAACTTAAAATTTCTCATCGGGCAACTCTGCTCATCATCCCTATCTCTGCAAAAAGAAGCCGCCAAAGGGCTCCGTCGGTTAACAACACGTGTCCCGTCAATCCGAACACTTTTCTCTGAATCACCCGATTTCATCCGAGAACTAACGTTCCCACTCTCTACGTTGGGCAGCTTCTCGGTCGGTCCTATCAACCCGATCCCCCCTCCTGATCTTCACGAGGATTTGATCACGACACTGCTAAACATCTCTATCCATGACGACAACAAAAGACTAGTAGCTGAGAATCCTTTCAATATCTGTGTCCTCATTGGTTCCTTAGTTCACGGAACAATCCAGACAAAAATAAATGCGGCAGCGGCTCTGTTCACATTAGCGGCTCTGGACTCTAACAAAGTCATTATTGGAAAATCAGGTGCTCTGAAATATCTAATCGACCTTCTAAAAGAGGGGCATCCATTAGTCGTGAAGGATGTTGCCTTGGCAATTTACAATATATGCATCTTGGTCGAGAATAGAAGTATGGCTGTTGATGCCGGGGCAGTGAGGGTCATTATGGAGAAGATTAAGGACAAACTATTAGTCGACGAATTGCTGACTTTACTCGCAATGCTTTCTAGCCATCAGAATGCTGTTGAGGAAATGGCGGATCTAGGGGCGGTGCCATGTTTTTTGAGGATAATAAGTGAGACGATGAATACTGATCGGAACACAGAGAATTGTATGGCAATGATTTACTCGATTTGTGCGCGGGACAGAAAGAAATTGAGGGAGATAAGCAAGGAGAAGGATGGCATCTATACGGTCTCGAAACTAACAAAGTATGGAAATACGAGGGCGATTAGAAAGGCTGAAGCAATCATGCACAGATTGCTTGAAGCTGGTATGTCTGCTCCTTGTAATGAATGA 1365 45.2 MEARAMDLKKELQRLVKVIVEADDDGYAIETLEEVMKTLSALMKLKSKKSSSDLEVPEEFKCPISKELMIDPVIVSTGQTYDRPFIQSWLKEHGQRTCPKTKQVLSYSLLTPNYLVREIISRWCKDHGIDHLIPTTSSADEPDDTALTKFDRTNLKFLIGQLCSSSLSLQKEAAKGLRRLTTRVPSIRTLFSESPDFIRELTFPLSTLGSFSVGPINPIPPPDLHEDLITTLLNISIHDDNKRLVAENPFNICVLIGSLVHGTIQTKINAAAALFTLAALDSNKVIIGKSGALKYLIDLLKEGHPLVVKDVALAIYNICILVENRSMAVDAGAVRVIMEKIKDKLLVDELLTLLAMLSSHQNAVEEMADLGAVPCFLRIISETMNTDRNTENCMAMIYSICARDRKKLREISKEKDGIYTVSKLTKYGNTRAIRKAEAIMHRLLEAGMSAPCNE 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2978931 2981431 - Conep10aG0064200.1 Cone10ag0625 446423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0625 454 SUPERFAMILY ARM repeat 154 443 IPR016024 -
Cone10ag0625 454 CDD RING-Ubox_PUB 57 110 IPR045210 -
Cone10ag0625 454 ProSiteProfiles U-box domain profile. 55 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0625 454 SUPERFAMILY RING/U-box 45 129 - -
Cone10ag0625 454 Pfam Armadillo/beta-catenin-like repeat 283 319 IPR000225 GO:0005515(InterPro)
Cone10ag0625 454 Pfam U-box domain 56 127 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0625 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 131 IPR013083 -
Cone10ag0625 454 Gene3D - 147 450 IPR011989 -
Cone10ag0625 454 Coils Coil 5 25 - -
Cone10ag0625 454 PANTHER U BOX DOMAIN-CONTAINING 15 444 - -
Cone10ag0625 454 SMART Ubox_2 59 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0625 K27971 - - vvi:100264137 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0625 Cone-Chr10:2978931 Cone7ag0984 Cone-Chr7:7594941 2.29E-129 dispersed
Cone10ag0625 Cone-Chr10:2978931 Cone4ag1146 Cone-Chr4:9843711 5.02E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0625 . . . . Cme05g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002180 2 2 3 3 3 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 1 2 2 2 4 2 1 61