Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0626 ATGGCCAGTTTAGTGAGGTTAGATGCATGGAAGAATAGTGTTGCTAGTTGTGTAATAATGTTTATTGTATTAGGAAGTCTTAATAATTATGCTCAAATAGAGGCAGCAAGGGCTTTCTTTGTGTTTGGAGATTCATTGGTTGATAATGGCAATAACAACTTCCTAGCAACCACGGCTCGAGCCGATTCGCCGCCTTACGGCATTGATTTTCCTACTCATAGACCTACTGGGCGTTTCTCTAATGGCCTAAACATCCCTGACTTTATTAGTCAACGTCTTGGCTCGAGATTCTTGCTGCCATACTTGAACCCTCGACTCAACGGGCGAAGGCTACTTGACGGTGCCAATTTCGCTTCCGCTGGCATTGGAATTCTAAACGATACGGGAATTCAATTCTTAAACATAATAAGGATGTTCCGGCAATTGGAGTACTTTCAACAATACCAATATCGGGTGGCTTCTCGAATCGGATCAAGAAGAACAGACCAACTTGTTAATGGAGCTCTTGTCCTAATTACGGTTGGTGGTAACGATTTTGTTAACAACTACTACTTGGTCCCTTACTCTGCTAGATCACGTCAGTTCTCTCTGCCTGATTACGTCAAGTATCTCATTTCTGAGTACCGCAAGATTCTATTGAAGCTGTATGAGCTCGGAGCAAGAAGAGTTCTTGTAACGGGTACCGGCCCTTTGGGCTGTGCACCTGCAGAATTGGCCCAACGAAGTGCAAACGGGCAATGTGCAGCTGAGCTTCAACGGGCTGCTGGCCTGTTCAATCCACAACTTGGACGCATGTTAAGAGGACTTAATGCTCAGCTACGAGCTGATGTTTTCATTAGTGCTAACACCCAGATCATGAATAATAATTTCATCACTAACCCTCGAGCATACGGATTTGTTACATCAAAAGTGGCATGTTGTGGTCAGGGACCGTACAATGGACTAGGACTATGCACTGCAGCTTCAAACTTGTGCCCGAACAGAGACGTCTATGCATTTTGGGATCCATTCCATCCGTCGGAAAGAGCGAACCGGTTAATCGTGCAACAAATCTTGAGTGGCTCTCTTAGACACATGAACCCCATGAATCTCTCAACTATCCTTGCCTTAGATTCCAAAACCACTTAA 1128 44.59 MASLVRLDAWKNSVASCVIMFIVLGSLNNYAQIEAARAFFVFGDSLVDNGNNNFLATTARADSPPYGIDFPTHRPTGRFSNGLNIPDFISQRLGSRFLLPYLNPRLNGRRLLDGANFASAGIGILNDTGIQFLNIIRMFRQLEYFQQYQYRVASRIGSRRTDQLVNGALVLITVGGNDFVNNYYLVPYSARSRQFSLPDYVKYLISEYRKILLKLYELGARRVLVTGTGPLGCAPAELAQRSANGQCAAELQRAAGLFNPQLGRMLRGLNAQLRADVFISANTQIMNNNFITNPRAYGFVTSKVACCGQGPYNGLGLCTAASNLCPNRDVYAFWDPFHPSERANRLIVQQILSGSLRHMNPMNLSTILALDSKTT 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2985368 2987079 - Conep10aG0064300.1 Cone10ag0626 446424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0626 375 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 18 367 IPR051058 -
Cone10ag0626 375 Pfam GDSL-like Lipase/Acylhydrolase 40 350 IPR001087 GO:0016788(InterPro)
Cone10ag0626 375 CDD SGNH_plant_lipase_like 38 355 IPR035669 -
Cone10ag0626 375 Gene3D SGNH hydrolase 27 355 IPR036514 -
Cone10ag0626 375 SUPERFAMILY SGNH hydrolase 39 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0626 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0626 Cone-Chr10:2985368 Cone1ag0881 Cone-Chr1:54459956 5.61E-210 dispersed
Cone10ag0626 Cone-Chr10:2985368 Cone10ag0627 Cone-Chr10:2990987 8.34E-197 tandem
Cone8ag0882 Cone-Chr8:8648766 Cone10ag0626 Cone-Chr10:2985368 1.97E-54 transposed
Cone10ag0626 Cone-Chr10:2985368 Cone3ag0663 Cone-Chr3:3337035 4.99E-196 wgd
Cone10ag0626 Cone-Chr10:2985368 Cone5ag0573 Cone-Chr5:2467651 2.27E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g775 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone10ag0626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001042 5 2 4 6 6 2 2 2 2 2 2 2 2 2 2 2 2 7 2 2 2 2 2 2 2 2 2 4 2 4 82