Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0633 ATGTCTTCATCTTACCCTGTTCTTCATATGCCTATGGAAGACAAGTATCCAAAAAGGCCAGAACCATTTGAAGTTTTTTCAGAAAGGGAACTTATGAAGAAGCCCCTTTCACAGGCTCCCACTATGGTTTCAAACACCCGAACTGTGGGCCATCTTTTTTCATCACCCTCGGCATTTCCGTATGATATCCATTTCCCTTCACTTTCGCTGCATGAAGGGCAATCTCATCATTCCCCATTTATTTCTCAGTCTGCAAGTGCCCGTAATTCCCAGCCAGTAGTAGTACAATCTACAGCATTAACTGACCCAGATGAACAGAATATTCCCTGGTCTGGGGAGCCACTTCAGGATCTTCTTGACTTTTCGGACAATGTCCCACCTGGACAGAATGGCCAGGGGGAGTTCATTGCGGGCCCCATGACATCAGACGACCAGTCCAAAAGAACAGATTGGCCAACTTGGGCTGATCAGTTTATCTCAGTTGATGATAGTCTGGAAGCAAATTGGAGCGAGATTTTTGCTGACTCTACCATTGCTGATTCTAAATTAGAGGGACCACAGGCCCAAATCGGTCAAAGGGAGATACAACCATCTGGGGAGCTCCAATCTCCTAACTCCTCATCCGCCACGCCTGCAACGCGACCCCGAATGCGGTGGACCCCAGAGCTTCACGAGGCCTTTGTGGAAGCTGTCAATCAGCTTGGTGGCAGTGAAAGAGCCACTCCTAAGGGGGTTTTAAAGCTCATGAATGTTGAAGGCCTGACCATATATCATGTAAAAAGCCATCTCCAGAAATATCGAACCGCCAGATACAAACCTGAATCATCAGAAGGGACTTCAGAGAAGAAACTGACTCTCGGTGAAGAAATGAAAACTCTAGACTTGAAAACGAGTATGGGCATAACCGAAGCATTACGATTGCAAATGGAAGTGCAGAAGCGGCTCCACGAACAGCTCGAGATTCAAAGGAACTTGCAGCTAAGAATCGAAGAACAAGGCAGGAATCTTCAAGAGATGTTCGAGAAACAAAGAAAGATGGAGAACGAGAAGTTTTCAAAGGTCGATGACTTATCGACCTCAGTTCAAGTTAATGATCAATCAGAAGAAACCTCCGAGCCAGGTCAAGACATACCAGATATAGGGACAAGTAATGCCAAAGTAGCCACACAGGAACACGGTTCTAGGTCCGAAAATAAGAAGCAAAAGGCCCGAGAAAGCACAAGCAGCGAGAAAAATGAACAGTGCAATGAAATTGGTGGGGAGTGTAGTGGCCCGGACACAAAACGAGCAAGAACAGCAGATGAAACAGTGACATCATCATAG 1323 46.18 MSSSYPVLHMPMEDKYPKRPEPFEVFSERELMKKPLSQAPTMVSNTRTVGHLFSSPSAFPYDIHFPSLSLHEGQSHHSPFISQSASARNSQPVVVQSTALTDPDEQNIPWSGEPLQDLLDFSDNVPPGQNGQGEFIAGPMTSDDQSKRTDWPTWADQFISVDDSLEANWSEIFADSTIADSKLEGPQAQIGQREIQPSGELQSPNSSSATPATRPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMNVEGLTIYHVKSHLQKYRTARYKPESSEGTSEKKLTLGEEMKTLDLKTSMGITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRNLQEMFEKQRKMENEKFSKVDDLSTSVQVNDQSEETSEPGQDIPDIGTSNAKVATQEHGSRSENKKQKARESTSSEKNEQCNEIGGECSGPDTKRARTADETVTSS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3037495 3041760 + Conep10aG0065000.1 Cone10ag0633 446431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0633 440 Pfam Myb-like DNA-binding domain 216 267 IPR001005 -
Cone10ag0633 440 MobiDBLite consensus disorder prediction 191 214 - -
Cone10ag0633 440 SUPERFAMILY Homeodomain-like 213 268 IPR009057 -
Cone10ag0633 440 MobiDBLite consensus disorder prediction 392 411 - -
Cone10ag0633 440 Coils Coil 329 349 - -
Cone10ag0633 440 Gene3D - 213 272 - -
Cone10ag0633 440 MobiDBLite consensus disorder prediction 355 391 - -
Cone10ag0633 440 NCBIfam myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677(InterPro)
Cone10ag0633 440 MobiDBLite consensus disorder prediction 184 214 - -
Cone10ag0633 440 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 141 410 IPR046955 GO:0003700(InterPro)
Cone10ag0633 440 Coils Coil 302 322 - -
Cone10ag0633 440 FunFam Myb family transcription factor 213 271 - -
Cone10ag0633 440 MobiDBLite consensus disorder prediction 347 440 - -
Cone10ag0633 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 271 IPR017930 -
Cone10ag0633 440 Pfam MYB-CC type transfactor, LHEQLE motif 300 346 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0633 Cone-Chr10:3037495 Cone1ag0871 Cone-Chr1:54373506 1.20E-104 dispersed
Cone17ag0682 Cone-Chr17:4363368 Cone10ag0633 Cone-Chr10:3037495 1.29E-54 transposed
Cone1ag1658 Cone-Chr1:57777897 Cone10ag0633 Cone-Chr10:3037495 1.61E-18 wgd
Cone10ag0633 Cone-Chr10:3037495 Cone3ag0667 Cone-Chr3:3388592 5.56E-244 wgd
Cone10ag0633 Cone-Chr10:3037495 Cone5ag0561 Cone-Chr5:2394518 4.75E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44204 PF00970 FAD_binding_6 1.30E-30 CL0076 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0633 - - - 0.0