Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0643 ATGGGAACCGAACTTTTGAGAGTTTGTGTTAAAGAAGAGAATGACGATTTTCCATCAGCTCCACCTGGATTCGAGTCATTTTCTTCATCATTTACTCCAATGAAGGTAGAAAAATATAGTGAGAAACAAGGGAGAGAAAACTTGATTAGTGCCGTAGCATCCACAAGTACTTCCGAAACACAATCAGTTCATGTGGAATCTGATGTCTCCAAGATTACAAGGTCTCTGCGTCGTAGGATAAAGTATGAAAAATATAACAACTGCTTGGATGAGGAGTGTGATTCTGACCTGCCTGATCAAAATTTCTCTTCAAGGCCTCTTCTTCCGAAGGGGGTAATTCGTGGCTGTGCAGACTGTAGTGGTTTCCAGAAGGTCACTGCAAGATGGCGACCGGAAGAATCTCATAGGCCAGAGCTCGAGGATGCTCCTGTTTTCTGCCCTAGCGAAGAGGAGTTTGACGATACTTTGGGCTATATAGCAAGCATACGCCCAAAAGCAGAACCATATGGGATCTGTCGTATTGTACCTCCCCCTTCTTGGAAACCACCTTGTCCTCTCAAGGAAAAAACTATATGGGAATCTTCGAAATTTTCTACCCGTGTTCAAAGAATTGATAAACTTCAGAATCGAGGTTCAGTGAGAACGATGTCAAGGCTTCATAGTCAAATGAGGAAGAAAAGGAGAAGATGCGGCCGAGTGGGACCTGATTCAACTAGTGATAATGTAGGAATTTTTGGTGGCGGACCTTCCTCTGAGGCTGAGATATTTGGGTTTGAACCCGGTCCACCATTTACTCTAGAAACTTTTCAGAAATATGCTGATGACTTCAAAGCTCAATATTTTCGTAAAGCAGAGACTGATACTGTCAAAGAGCAGGGTGAACCGTCTATAGACAATATTGAAGGTGAATACTGGCGAATGGTAGACAAACCTACCGAAGAAATTGAGGTACTATACGGGGCCGATCTAGAAACTGGGAATTTTGGTAGTGGGTTTCCAAAAGTTTGCCGTCAAGATGGTTCAGCATCAGATGAAAGATATGTGGAATCTGGATGGAACTTAAACAACTTTCCGAGGCTTCCTGGATCTGTTCTATCTTATGAAAGCAGTGAGATATCTGGTGTTTTGGTGCCATGGTTGTATATAGGAATGTGCTTTTCGTCCTTTTGTTGGCACGTTGAAGATCACCACTTATACTCATTAAATTACATGCATTGGGGTGCTCCAAAAATCTGGTACGGTGTTGCAGAGAAGGATGCCTGTAGATTAGAGGAGGCTATGAGAAAGCATTTGCCCGATCTTTTTGAAGAACAGCCAGACTTACTTCATAAATTGGTGACACAGCTTTCCCCCTCCATACTGAAATCCGAGGGGGTGCCTGTTTATAGGTGCACTCAAAATCCCGGAGAGTTTGTTCTCACCTTCCCTCGAGCATACCATTCAGGATTCAACTCTGGTTTCAATTGTGCTGAGGCGGTTAATGTAGCTCCAGTAGACTGGTTTCCACATGGGCAAATTGCTATTGAGTTGTACCGTGAGCAAGGAAGGAGGACTTCAATTTCCCATGATAAACTCTTGCTTGGGGCCGCAAGAGAAGCGGTTAGAGCCCAGTGGGAACTTAATTTATTGAGAAAGAATACTGCAGATAACTTAAGATGGAAAGGCGTATGTGGAAAAGATGGGATCCTCGCAAAAACATTCAAGACACGTGTTGACATGGAGCGAGCGAGGAGGAATTTTCCTGCCAGTATTTCCCAGGCAAAGAAGATGGAGAACAATTTTGACGCAGCCAATGAGAGAGAATGTTCTTTATGCCTCTTTGACCTACACCTCTCTGCAGTTGGATGTTATTGTTCCCCAGATAGATATGTGTGCATGAATCATGCAAAACAGATGTGCACTTGTGCATGGGGGACTAGATTTTTTCTCTTCCGTTATGACATCAATGAATTAAACATCCTGGTCGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCTAGACTGGATCTTGGATTAGCACTTAGTTCTTACATCTCCAAAGAAAGGATCCAATTTAGTAGATCAATGTTTTCTTCTGAAGAACAATTGTTCAAGGATCTGAAGACACCAGTATCATCTAATTCCCTTAAAGATTCCCAATTGGTGGGACCCTTACAAAGTCCAACTATGACTGCTGGTGATATCTCCTCTCAACAGAACAATAAGCAGGCAGATGATGGTATTGTGGCTTCCAATTTGAAATCCCCTGTTTGCCAATTGTCTCAAGAAGATACTTCATATTGGGAAAGTTCAGTTGCCAAGAAAAATAGAGCTGATAAGGCTTCAGTTTCGGAACAAAATGTGATACTTTTGAGCGATGATGAAAGTGATGAGCCTAAAAGGCATCAAGTCTTAGATCTAGAAAAAGAAAGCTCCTTAGAAAAGAAAATAGAAAAGTCAGTAGGGTTGCCAGATTCAAGCAGTACAGTGAGGATCCGCAATAATGATAAAGATGCAGTCTTGGCCCTACCAGTGATCAATGTGGCTGTAAAGGTTGAAAAGGACATTATTAGCTCATCGTCCAATAAAAAAGGGAGTAAATGTCTATTACCACAGGCTGTACTGATAAAAGAAGAACCTTCTGAAGATCGTATGCAGGTTTTAAAAACTAGTGAATCAAATTCCACTGATCTTACTGTCTCAGAGTCGTGTAAAAATAGTCCGACATTTTCAACTTCAAGGGATGGCAATAGCAAGCAAGTGCAGATTAGTAGCACTGGAAACCCAAACAATGAGCCTAAGCTTGAAGACAGGGGAGTAAATACCTCCTCAAATTTGTCAGACAATATAAAACCCATATCTGGAAACATATCTTGTGCTCAATATAGTTTAGATCGACATGTGAGACAGAAGGGTCCCCGGATAGCAAAAGTAGTACGGAGGATCAACTGCAATGTGGAGCCTCTGGAATTTGGAATTGTGGTTTCAGGACGCTCTTGGTCTAACAGTCGGGCCATTTTTCCCAAAGGATTTAAGAGTCGTGTCAGGTACATAAGCGTCTCAGATCCATCGAACATGTGTCACTATATCTCAGAAATTCTGGATGCAGGACGAGATGGACCTCTTTTCATGGTTTCTTTGGAACACTGTCCAAGCGAGGTGTTCATTCATATTTCTGCTGCCAGATGCTGGGAATTGGTAAGAGAGAGAGTGAATCAAGAGATAACAAGGCAACATAAATTGGGTAAAGCCAACCTCCCTCCTCTACAGCCTCCTGGTAGTTTGGATGCGTTTGAAATGTTTGGGTTTACTTCACCAGCAATCGTGCAGGCTATAGAAGCAATGGATCGAAATCGAATATGTACTGAATATTGGGACTCTAGGCCGTATTCAAGGCCTCAAGTAATGATTCCACAACCTTCTTCTCATCAATCAACCGACAATCTAAACCTCCATAAAAGGGCAAGGGAGAAATATGATACTGGAACGCCCGAAATTAGTCTCTTGCCTGCTGGGGTCCACAATATACTCGGAGGTTTATTTAAGAAGTCGAACCGAGAAGAATTACAGGCACTGTATAGTATTCTAAGATATGATAATAGATCAGCATCTGATCAAGGCTCGTTAATTCGGCTTAATGAAGAGATTCAAGAGCGTTCTAGATGA 3654 42.2 MGTELLRVCVKEENDDFPSAPPGFESFSSSFTPMKVEKYSEKQGRENLISAVASTSTSETQSVHVESDVSKITRSLRRRIKYEKYNNCLDEECDSDLPDQNFSSRPLLPKGVIRGCADCSGFQKVTARWRPEESHRPELEDAPVFCPSEEEFDDTLGYIASIRPKAEPYGICRIVPPPSWKPPCPLKEKTIWESSKFSTRVQRIDKLQNRGSVRTMSRLHSQMRKKRRRCGRVGPDSTSDNVGIFGGGPSSEAEIFGFEPGPPFTLETFQKYADDFKAQYFRKAETDTVKEQGEPSIDNIEGEYWRMVDKPTEEIEVLYGADLETGNFGSGFPKVCRQDGSASDERYVESGWNLNNFPRLPGSVLSYESSEISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVAEKDACRLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWFPHGQIAIELYREQGRRTSISHDKLLLGAAREAVRAQWELNLLRKNTADNLRWKGVCGKDGILAKTFKTRVDMERARRNFPASISQAKKMENNFDAANERECSLCLFDLHLSAVGCYCSPDRYVCMNHAKQMCTCAWGTRFFLFRYDINELNILVEALEGKLSAVYRWARLDLGLALSSYISKERIQFSRSMFSSEEQLFKDLKTPVSSNSLKDSQLVGPLQSPTMTAGDISSQQNNKQADDGIVASNLKSPVCQLSQEDTSYWESSVAKKNRADKASVSEQNVILLSDDESDEPKRHQVLDLEKESSLEKKIEKSVGLPDSSSTVRIRNNDKDAVLALPVINVAVKVEKDIISSSSNKKGSKCLLPQAVLIKEEPSEDRMQVLKTSESNSTDLTVSESCKNSPTFSTSRDGNSKQVQISSTGNPNNEPKLEDRGVNTSSNLSDNIKPISGNISCAQYSLDRHVRQKGPRIAKVVRRINCNVEPLEFGIVVSGRSWSNSRAIFPKGFKSRVRYISVSDPSNMCHYISEILDAGRDGPLFMVSLEHCPSEVFIHISAARCWELVRERVNQEITRQHKLGKANLPPLQPPGSLDAFEMFGFTSPAIVQAIEAMDRNRICTEYWDSRPYSRPQVMIPQPSSHQSTDNLNLHKRAREKYDTGTPEISLLPAGVHNILGGLFKKSNREELQALYSILRYDNRSASDQGSLIRLNEEIQERSR 1217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3087132 3094846 + Conep10aG0066000.1 Cone10ag0643 446441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0643 1217 Pfam F/Y-rich N-terminus 985 1031 IPR003888 GO:0005634(InterPro)
Cone10ag0643 1217 SMART fyrc_3 1038 1132 IPR003889 GO:0005634(InterPro)
Cone10ag0643 1217 SMART JmjN_1 141 182 IPR003349 -
Cone10ag0643 1217 ProSiteProfiles JmjC domain profile. 346 512 IPR003347 -
Cone10ag0643 1217 SMART cupin_9 346 512 IPR003347 -
Cone10ag0643 1217 Pfam F/Y rich C-terminus 1036 1120 IPR003889 GO:0005634(InterPro)
Cone10ag0643 1217 Gene3D Cupin 127 496 - -
Cone10ag0643 1217 Pfam C5HC2 zinc finger 602 653 IPR004198 -
Cone10ag0643 1217 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Cone10ag0643 1217 MobiDBLite consensus disorder prediction 877 945 - -
Cone10ag0643 1217 MobiDBLite consensus disorder prediction 883 945 - -
Cone10ag0643 1217 FunFam Putative lysine-specific demethylase JMJ16 980 1118 - -
Cone10ag0643 1217 ProSiteProfiles FYR domain FYRC motif profile. 1034 1124 IPR003889 GO:0005634(InterPro)
Cone10ag0643 1217 Pfam JmjC domain, hydroxylase 379 495 IPR003347 -
Cone10ag0643 1217 Gene3D - 981 1118 - -
Cone10ag0643 1217 MobiDBLite consensus disorder prediction 707 739 - -
Cone10ag0643 1217 ProSiteProfiles FYR domain FYRN motif profile. 974 1032 IPR003888 GO:0005634(InterPro)
Cone10ag0643 1217 SMART fyrn_3 988 1032 IPR003888 GO:0005634(InterPro)
Cone10ag0643 1217 PANTHER LYSINE-SPECIFIC DEMETHYLASE 130 893 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone10ag0643 1217 Pfam jmjN domain 143 176 IPR003349 -
Cone10ag0643 1217 SUPERFAMILY Clavaminate synthase-like 313 539 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0643 K11446 - - cit:102609905 1434.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0643 Cone-Chr10:3087132 Cone6ag1120 Cone-Chr6:7877660 1.26E-266 dispersed
Cone10ag0643 Cone-Chr10:3087132 Cone17ag0624 Cone-Chr17:3515368 4.58E-223 wgd
Cone10ag0643 Cone-Chr10:3087132 Cone3ag0673 Cone-Chr3:3426695 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g610 Blo10g00272 Blo11g00440 . . . Bpe09g00662 Bma13g00412 . . . . Cma12g00959 . Car12g00919 . Cpe07g00798 . . . . . . . . . . . . . . . Cone10ag0643 Cone3ag0673 . . . Csa02g00757 . Cme05g01133 . . . . . . . . . Cmo05g00802 Cmo12g00962 . . . . . . Bhi06g01091 . . . . . . Cla11g01036 Cam11g1090 . Cco11g1094 Clacu11g1252 Cmu11g1088 Cre11g1512 . . Chy05g00772 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0673 . 1 1213 JUMONJI Transcription Factor Family AT1G08620 54.5 0.0e+00 1268.1
Cone10ag0643 . 1 1215 JUMONJI Transcription Factor Family AT1G08620 54.3 0.0e+00 1258.4
Cone9ag1086 . 27 929 JUMONJI Transcription Factor Family AT1G30810 52.6 6.3e-257 884.4
Cone6ag1120 . 32 924 JUMONJI Transcription Factor Family AT1G30810 52.5 5.9e-255 877.9
Cone6ag1120 . 63 892 JUMONJI Transcription Factor Family AT4G20400 52.8 1.1e-249 860.5
Cone9ag1086 . 65 895 JUMONJI Transcription Factor Family AT4G20400 52.6 5.8e-248 854.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44205 None None None None Cone TR