Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0643 ATGGGAACCGAACTTTTGAGAGTTTGTGTTAAAGAAGAGAATGACGATTTTCCATCAGCTCCACCTGGATTCGAGTCATTTTCTTCATCATTTACTCCAATGAAGGTAGAAAAATATAGTGAGAAACAAGGGAGAGAAAACTTGATTAGTGCCGTAGCATCCACAAGTACTTCCGAAACACAATCAGTTCATGTGGAATCTGATGTCTCCAAGATTACAAGGTCTCTGCGTCGTAGGATAAAGTATGAAAAATATAACAACTGCTTGGATGAGGAGTGTGATTCTGACCTGCCTGATCAAAATTTCTCTTCAAGGCCTCTTCTTCCGAAGGGGGTAATTCGTGGCTGTGCAGACTGTAGTGGTTTCCAGAAGGTCACTGCAAGATGGCGACCGGAAGAATCTCATAGGCCAGAGCTCGAGGATGCTCCTGTTTTCTGCCCTAGCGAAGAGGAGTTTGACGATACTTTGGGCTATATAGCAAGCATACGCCCAAAAGCAGAACCATATGGGATCTGTCGTATTGTACCTCCCCCTTCTTGGAAACCACCTTGTCCTCTCAAGGAAAAAACTATATGGGAATCTTCGAAATTTTCTACCCGTGTTCAAAGAATTGATAAACTTCAGAATCGAGGTTCAGTGAGAACGATGTCAAGGCTTCATAGTCAAATGAGGAAGAAAAGGAGAAGATGCGGCCGAGTGGGACCTGATTCAACTAGTGATAATGTAGGAATTTTTGGTGGCGGACCTTCCTCTGAGGCTGAGATATTTGGGTTTGAACCCGGTCCACCATTTACTCTAGAAACTTTTCAGAAATATGCTGATGACTTCAAAGCTCAATATTTTCGTAAAGCAGAGACTGATACTGTCAAAGAGCAGGGTGAACCGTCTATAGACAATATTGAAGGTGAATACTGGCGAATGGTAGACAAACCTACCGAAGAAATTGAGGTACTATACGGGGCCGATCTAGAAACTGGGAATTTTGGTAGTGGGTTTCCAAAAGTTTGCCGTCAAGATGGTTCAGCATCAGATGAAAGATATGTGGAATCTGGATGGAACTTAAACAACTTTCCGAGGCTTCCTGGATCTGTTCTATCTTATGAAAGCAGTGAGATATCTGGTGTTTTGGTGCCATGGTTGTATATAGGAATGTGCTTTTCGTCCTTTTGTTGGCACGTTGAAGATCACCACTTATACTCATTAAATTACATGCATTGGGGTGCTCCAAAAATCTGGTACGGTGTTGCAGAGAAGGATGCCTGTAGATTAGAGGAGGCTATGAGAAAGCATTTGCCCGATCTTTTTGAAGAACAGCCAGACTTACTTCATAAATTGGTGACACAGCTTTCCCCCTCCATACTGAAATCCGAGGGGGTGCCTGTTTATAGGTGCACTCAAAATCCCGGAGAGTTTGTTCTCACCTTCCCTCGAGCATACCATTCAGGATTCAACTCTGGTTTCAATTGTGCTGAGGCGGTTAATGTAGCTCCAGTAGACTGGTTTCCACATGGGCAAATTGCTATTGAGTTGTACCGTGAGCAAGGAAGGAGGACTTCAATTTCCCATGATAAACTCTTGCTTGGGGCCGCAAGAGAAGCGGTTAGAGCCCAGTGGGAACTTAATTTATTGAGAAAGAATACTGCAGATAACTTAAGATGGAAAGGCGTATGTGGAAAAGATGGGATCCTCGCAAAAACATTCAAGACACGTGTTGACATGGAGCGAGCGAGGAGGAATTTTCCTGCCAGTATTTCCCAGGCAAAGAAGATGGAGAACAATTTTGACGCAGCCAATGAGAGAGAATGTTCTTTATGCCTCTTTGACCTACACCTCTCTGCAGTTGGATGTTATTGTTCCCCAGATAGATATGTGTGCATGAATCATGCAAAACAGATGTGCACTTGTGCATGGGGGACTAGATTTTTTCTCTTCCGTTATGACATCAATGAATTAAACATCCTGGTCGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCTAGACTGGATCTTGGATTAGCACTTAGTTCTTACATCTCCAAAGAAAGGATCCAATTTAGTAGATCAATGTTTTCTTCTGAAGAACAATTGTTCAAGGATCTGAAGACACCAGTATCATCTAATTCCCTTAAAGATTCCCAATTGGTGGGACCCTTACAAAGTCCAACTATGACTGCTGGTGATATCTCCTCTCAACAGAACAATAAGCAGGCAGATGATGGTATTGTGGCTTCCAATTTGAAATCCCCTGTTTGCCAATTGTCTCAAGAAGATACTTCATATTGGGAAAGTTCAGTTGCCAAGAAAAATAGAGCTGATAAGGCTTCAGTTTCGGAACAAAATGTGATACTTTTGAGCGATGATGAAAGTGATGAGCCTAAAAGGCATCAAGTCTTAGATCTAGAAAAAGAAAGCTCCTTAGAAAAGAAAATAGAAAAGTCAGTAGGGTTGCCAGATTCAAGCAGTACAGTGAGGATCCGCAATAATGATAAAGATGCAGTCTTGGCCCTACCAGTGATCAATGTGGCTGTAAAGGTTGAAAAGGACATTATTAGCTCATCGTCCAATAAAAAAGGGAGTAAATGTCTATTACCACAGGCTGTACTGATAAAAGAAGAACCTTCTGAAGATCGTATGCAGGTTTTAAAAACTAGTGAATCAAATTCCACTGATCTTACTGTCTCAGAGTCGTGTAAAAATAGTCCGACATTTTCAACTTCAAGGGATGGCAATAGCAAGCAAGTGCAGATTAGTAGCACTGGAAACCCAAACAATGAGCCTAAGCTTGAAGACAGGGGAGTAAATACCTCCTCAAATTTGTCAGACAATATAAAACCCATATCTGGAAACATATCTTGTGCTCAATATAGTTTAGATCGACATGTGAGACAGAAGGGTCCCCGGATAGCAAAAGTAGTACGGAGGATCAACTGCAATGTGGAGCCTCTGGAATTTGGAATTGTGGTTTCAGGACGCTCTTGGTCTAACAGTCGGGCCATTTTTCCCAAAGGATTTAAGAGTCGTGTCAGGTACATAAGCGTCTCAGATCCATCGAACATGTGTCACTATATCTCAGAAATTCTGGATGCAGGACGAGATGGACCTCTTTTCATGGTTTCTTTGGAACACTGTCCAAGCGAGGTGTTCATTCATATTTCTGCTGCCAGATGCTGGGAATTGGTAAGAGAGAGAGTGAATCAAGAGATAACAAGGCAACATAAATTGGGTAAAGCCAACCTCCCTCCTCTACAGCCTCCTGGTAGTTTGGATGCGTTTGAAATGTTTGGGTTTACTTCACCAGCAATCGTGCAGGCTATAGAAGCAATGGATCGAAATCGAATATGTACTGAATATTGGGACTCTAGGCCGTATTCAAGGCCTCAAGTAATGATTCCACAACCTTCTTCTCATCAATCAACCGACAATCTAAACCTCCATAAAAGGGCAAGGGAGAAATATGATACTGGAACGCCCGAAATTAGTCTCTTGCCTGCTGGGGTCCACAATATACTCGGAGGTTTATTTAAGAAGTCGAACCGAGAAGAATTACAGGCACTGTATAGTATTCTAAGATATGATAATAGATCAGCATCTGATCAAGGCTCGTTAATTCGGCTTAATGAAGAGATTCAAGAGCGTTCTAGATGA 3654 42.2 MGTELLRVCVKEENDDFPSAPPGFESFSSSFTPMKVEKYSEKQGRENLISAVASTSTSETQSVHVESDVSKITRSLRRRIKYEKYNNCLDEECDSDLPDQNFSSRPLLPKGVIRGCADCSGFQKVTARWRPEESHRPELEDAPVFCPSEEEFDDTLGYIASIRPKAEPYGICRIVPPPSWKPPCPLKEKTIWESSKFSTRVQRIDKLQNRGSVRTMSRLHSQMRKKRRRCGRVGPDSTSDNVGIFGGGPSSEAEIFGFEPGPPFTLETFQKYADDFKAQYFRKAETDTVKEQGEPSIDNIEGEYWRMVDKPTEEIEVLYGADLETGNFGSGFPKVCRQDGSASDERYVESGWNLNNFPRLPGSVLSYESSEISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVAEKDACRLEEAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWFPHGQIAIELYREQGRRTSISHDKLLLGAAREAVRAQWELNLLRKNTADNLRWKGVCGKDGILAKTFKTRVDMERARRNFPASISQAKKMENNFDAANERECSLCLFDLHLSAVGCYCSPDRYVCMNHAKQMCTCAWGTRFFLFRYDINELNILVEALEGKLSAVYRWARLDLGLALSSYISKERIQFSRSMFSSEEQLFKDLKTPVSSNSLKDSQLVGPLQSPTMTAGDISSQQNNKQADDGIVASNLKSPVCQLSQEDTSYWESSVAKKNRADKASVSEQNVILLSDDESDEPKRHQVLDLEKESSLEKKIEKSVGLPDSSSTVRIRNNDKDAVLALPVINVAVKVEKDIISSSSNKKGSKCLLPQAVLIKEEPSEDRMQVLKTSESNSTDLTVSESCKNSPTFSTSRDGNSKQVQISSTGNPNNEPKLEDRGVNTSSNLSDNIKPISGNISCAQYSLDRHVRQKGPRIAKVVRRINCNVEPLEFGIVVSGRSWSNSRAIFPKGFKSRVRYISVSDPSNMCHYISEILDAGRDGPLFMVSLEHCPSEVFIHISAARCWELVRERVNQEITRQHKLGKANLPPLQPPGSLDAFEMFGFTSPAIVQAIEAMDRNRICTEYWDSRPYSRPQVMIPQPSSHQSTDNLNLHKRAREKYDTGTPEISLLPAGVHNILGGLFKKSNREELQALYSILRYDNRSASDQGSLIRLNEEIQERSR 1217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3087132 3094846 + Conep10aG0066000.1 Cone10ag0643 446441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0643 1217 Pfam F/Y-rich N-terminus 985 1031 IPR003888 GO:0005634(InterPro)
Cone10ag0643 1217 SMART fyrc_3 1038 1132 IPR003889 GO:0005634(InterPro)
Cone10ag0643 1217 SMART JmjN_1 141 182 IPR003349 -
Cone10ag0643 1217 ProSiteProfiles JmjC domain profile. 346 512 IPR003347 -
Cone10ag0643 1217 SMART cupin_9 346 512 IPR003347 -
Cone10ag0643 1217 Pfam F/Y rich C-terminus 1036 1120 IPR003889 GO:0005634(InterPro)
Cone10ag0643 1217 Gene3D Cupin 127 496 - -
Cone10ag0643 1217 Pfam C5HC2 zinc finger 602 653 IPR004198 -
Cone10ag0643 1217 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Cone10ag0643 1217 MobiDBLite consensus disorder prediction 877 945 - -
Cone10ag0643 1217 MobiDBLite consensus disorder prediction 883 945 - -
Cone10ag0643 1217 FunFam Putative lysine-specific demethylase JMJ16 980 1118 - -
Cone10ag0643 1217 ProSiteProfiles FYR domain FYRC motif profile. 1034 1124 IPR003889 GO:0005634(InterPro)
Cone10ag0643 1217 Pfam JmjC domain, hydroxylase 379 495 IPR003347 -
Cone10ag0643 1217 Gene3D - 981 1118 - -
Cone10ag0643 1217 MobiDBLite consensus disorder prediction 707 739 - -
Cone10ag0643 1217 ProSiteProfiles FYR domain FYRN motif profile. 974 1032 IPR003888 GO:0005634(InterPro)
Cone10ag0643 1217 SMART fyrn_3 988 1032 IPR003888 GO:0005634(InterPro)
Cone10ag0643 1217 PANTHER LYSINE-SPECIFIC DEMETHYLASE 130 893 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone10ag0643 1217 Pfam jmjN domain 143 176 IPR003349 -
Cone10ag0643 1217 SUPERFAMILY Clavaminate synthase-like 313 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0643 Cone-Chr10:3087132 Cone6ag1120 Cone-Chr6:7877660 1.26E-266 dispersed
Cone10ag0643 Cone-Chr10:3087132 Cone17ag0624 Cone-Chr17:3515368 4.58E-223 wgd
Cone10ag0643 Cone-Chr10:3087132 Cone3ag0673 Cone-Chr3:3426695 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44205 None None None None Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0643 K11446 - cit:102609905 1434.85