Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0653 ATGGAGCAAGCTTCTGATCGGGAGGTTTCCTATAGAGGGGTTAGAAGAAGACCATGGGGAAAATATGCAGCTGAGATAAGGGATTCAACTAGAAATGGAGTTAGGGTTTGGTTGGGAACTTTTGACACAGCTGAGGCTGCTGCTTTAGCCTATGACCAAGCTGCTCTTACAATGAGAGGTTCGTTGGCGGTGCTTAATTTTCCGGTGGAAGTGGTGAGGCAATCGCTATGTGAAATGGATTACGAGTTTGAGGAGGGTGTGTCGCCTGTTTTGCAATTGAAGAAGAGGCACTCGATGGAGAGGAAGAATAAGAAGAAAACAGAGGAGGTGGGGGAGCGAAGCACGGCGGCGGCGAATAATGTGGTGGTTTTTGAGGATTTGGGAGCTGAGTATTTGGAAGAGCTTCTAACTAAATCAGATCGATTTTATTCTAATAAACCTTAG 444 45.95 MEQASDREVSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALTMRGSLAVLNFPVEVVRQSLCEMDYEFEEGVSPVLQLKKRHSMERKNKKKTEEVGERSTAAANNVVVFEDLGAEYLEELLTKSDRFYSNKP 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3151879 3152322 + Conep10aG0067000.1 Cone10ag0653 446451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0653 147 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0653 147 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0653 147 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0653 147 SMART rav1_2 10 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0653 147 FunFam Ethylene-responsive transcription factor 2 9 70 - -
Cone10ag0653 147 Gene3D AP2/ERF domain 10 71 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0653 147 PANTHER DNA-BINDING DOMAIN 6 108 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone10ag0653 147 Pfam AP2 domain 10 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone10ag0653 147 SUPERFAMILY DNA-binding domain 11 70 IPR016177 GO:0003677(InterPro)
Cone10ag0653 147 ProSiteProfiles AP2/ERF domain profile. 10 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0653 Cone-Chr10:3151879 Cone4ag1128 Cone-Chr4:9736830 5.07E-52 dispersed
Cone10ag0653 Cone-Chr10:3151879 Cone3ag0682 Cone-Chr3:3474558 1.01E-78 wgd
Cone10ag0653 Cone-Chr10:3151879 Cone4ag0322 Cone-Chr4:1457242 1.98E-26 wgd
Cone10ag0653 Cone-Chr10:3151879 Cone7ag0317 Cone-Chr7:1375445 5.68E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44206 PF01554 MatE 2.30E-22 CL0222 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0653 K14516 - cit:102610011 187.193