Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0673 ATGGCGGATAACCCGCCGGAGGGACTAGGGGATGATTTCTTCGAGCAGATTTTGGCGGTAAACCCACCTGCTTATAGTAGTAGAGGAGAAGCTGCAGGTGGGTATGTCGGTGGTAATCAAGGACCTGAGATGAATTCTATGCCTATGTCCTTGTTGCAGTTGGGGAGTGGGAGTGGCGGAAGTGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGTGGGTTGAGAGGGATGGGTGGTTTGGGTTTGCCTTTGGGGTTAACATTAGAACAGGGATTTTTAAGGCAAGAGAGGTTTAGAGAAGAGCTTGAAGCTAATAATAATCACGCTCCTTCTTCTACCTCTTCTTCCATTAATGAGAGAGATTCATCAGTCCATATGAACAGTTTGTTTCCAGCTTATGGACATCATCTGCAAACTCATCATCCTGTCCGTCCGGCGGTGCCAACTCCTAGTCAGCTCCACCAGCCCTATCATAGCCAGCTAACATCCGGGGCAATGGGTGGTGGACCACACCCTCCTTCCATCCGTCCCAGAGTGAGAGCAAAGCGTGGGAAAGCAACGGACCCGCATAGCATTGCAGAGCGGTTACGTCGGGAAAGAATTGCAGAAAGAATGAAGGCTTTGCAGGAGCTAGTTCCTAGTGCCAACAAGACAGATAGGGCAGCTATGCTTGATGAAATTGTGGATTATGTGAAGTTTCTGAGGCTCCAAGTCAAGGTTCTGAGCATGAGCAGACTGGGCGGAGCGGGTGCAGTGGCTCAGCTCGTAGCTGATGTGCCCTTATCGTCATCGGTTGAGGGAGAGGGGATAGAAGGTGGAAGCAATCAAAAAGCATGGGAGAAATGGTCAACAGATGGGACAGAACAAGAAGTAGCCAAACTGATGGAAGGAGACATTGGAACTGCAATGCAATATCTTCAATCCAAAGCGCTGTGTATTATGCCCATCTCATTAGCCTCCGCAATTTTCCGGACCGACCAATCGGACCTCTCATCAACAACTGTCAAGCCCGAGTCCAGCATGCCGCAATAG 1041 50.82 MADNPPEGLGDDFFEQILAVNPPAYSSRGEAAGGYVGGNQGPEMNSMPMSLLQLGSGSGGSGGGGGGGGGGGGGGGLRGMGGLGLPLGLTLEQGFLRQERFREELEANNNHAPSSTSSSINERDSSVHMNSLFPAYGHHLQTHHPVRPAVPTPSQLHQPYHSQLTSGAMGGGPHPPSIRPRVRAKRGKATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSSVEGEGIEGGSNQKAWEKWSTDGTEQEVAKLMEGDIGTAMQYLQSKALCIMPISLASAIFRTDQSDLSSTTVKPESSMPQ 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3253192 3256627 - Conep10aG0069000.1 Cone10ag0673 446471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0673 346 Gene3D - 183 245 IPR036638 GO:0046983(InterPro)
Cone10ag0673 346 MobiDBLite consensus disorder prediction 143 192 - -
Cone10ag0673 346 FunFam Transcription factor bHLH66 185 250 - -
Cone10ag0673 346 MobiDBLite consensus disorder prediction 43 57 - -
Cone10ag0673 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983(InterPro)
Cone10ag0673 346 Pfam Helix-loop-helix DNA-binding domain 193 238 IPR011598 GO:0046983(InterPro)
Cone10ag0673 346 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 323 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone10ag0673 346 SMART finulus 194 243 IPR011598 GO:0046983(InterPro)
Cone10ag0673 346 MobiDBLite consensus disorder prediction 36 77 - -
Cone10ag0673 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 247 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0673 Cone-Chr10:3253192 Cone7ag0587 Cone-Chr7:2818945 1.07E-53 dispersed
Cone9ag1243 Cone-Chr9:9107450 Cone10ag0673 Cone-Chr10:3253192 1.71E-12 dispersed
Cone1ag1718 Cone-Chr1:58034294 Cone10ag0673 Cone-Chr10:3253192 6.78E-104 wgd
Cone10ag0673 Cone-Chr10:3253192 Cone17ag0586 Cone-Chr17:3085417 4.58E-86 wgd
Cone10ag0673 Cone-Chr10:3253192 Cone20ag0823 Cone-Chr20:5833869 9.53E-83 wgd
Cone10ag0673 Cone-Chr10:3253192 Cone3ag0699 Cone-Chr3:3570636 1.27E-142 wgd
Cone10ag0673 Cone-Chr10:3253192 Cone5ag0543 Cone-Chr5:2302543 3.75E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44208 PF17136 ribosomal_L24 9.30E-21 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0673 - - - 0.0