Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0700 ATGACTTCTTCTGAACAACAGCACGACACCGTTTTCCCCGACGAAGACCTTGACGACGATGGAGCTTCGCTCGACGACGACGAAGACGACGACGATGATGACGACGAAGAAGAAGAATTGGAATTGTTGAACGACGACCCGTTGGTCGACGACGACGTCATCTCTCCCTCGCCCTCCACGTCATCCTTCGCCACGGCTACCGTCGCTGATGCTGCAGCCACTGTTACCGTCGCGATTCCTAGCGCTGCTGTAGTTCCTAACTCCGATCCTCCTAAATCCACCGCGACTACCGCATCGACTGTCGCTGCTAGTTCGTCCGATCTTAATAAACGGCCGCGGTTTAATACTCCGATGTCAACGATGAAAATTGAGGCTGTGATTTTACCGCAGGAGGAGAAGAAGCCGTTGGATGAGTCTCGGAAGCTTTTTCAGCGGCTTTGGACCGATGAGGATGAGATCGAACTCTTACAAGGGTTTCTCGATTACACGACTCAGCGAGGATCTACTCAACATCACCAGAACGATACCGCTTTATTTTACGATCAGATTAAATCCAAGCTTCAGCTGGATTTCAACAAGAATCAGCTTGTCGAGAAGCTTCGGAGGCTGAAGAAGAAGTATCGAAATGTTATGAGTAAGATCAGCTCCGGCAAAGAAGTCAGTTTCAAAAGCGCTCACGATCACGCCACCTTTCAAATATCTCGCAAGATCTGGGGCGATACTGGCCGAATTGGAGCAGAGGATAATGCTCTAGACGATGAAGATCCGAATTCTAACCCTAATTTCCATCATATTGAACCAAAGGACGAGGAAATGGCGGGATATAGTGCGGAGAAGAAGGCAGGAATCACACCAAGATCGAGGAAGCGATCCAGGCCTGGATCAGGATTGAGAACCGAAGAAACACCTGCTTCAAACGAGATTACGAACAGAGATAAGATATGTGTTGACAATAACAGCAATGTGAATAACATTTCAGGGGTGATTGAGGAGACAGTTAGAAGTTGTTTGTCTCCATTGTTCAAGGAGTTGTTGAATGGTGCAATGGGAAATCCATGTGGATCAAGGGCATATTCTGGATTGGCATCAAATCCTATACCCATGAGTTTCGGTCCAGGGTCGTTGAATTTTGGTAGCGGAGGGGAAATTGTAGATGATAGATGGAGAAAGCAGCAGATTTTGGAGCTGGAGGTTTATTCAAAGCGGCTTGAGCTGGTTCAGGATCAAATAAAGGTGGCACTCAATGAATTGCGATCCATGGGGGGGAGGTGA 1272 47.8 MTSSEQQHDTVFPDEDLDDDGASLDDDEDDDDDDDEEEELELLNDDPLVDDDVISPSPSTSSFATATVADAAATVTVAIPSAAVVPNSDPPKSTATTASTVAASSSDLNKRPRFNTPMSTMKIEAVILPQEEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTTQRGSTQHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVSFKSAHDHATFQISRKIWGDTGRIGAEDNALDDEDPNSNPNFHHIEPKDEEMAGYSAEKKAGITPRSRKRSRPGSGLRTEETPASNEITNRDKICVDNNSNVNNISGVIEETVRSCLSPLFKELLNGAMGNPCGSRAYSGLASNPIPMSFGPGSLNFGSGGEIVDDRWRKQQILELEVYSKRLELVQDQIKVALNELRSMGGR 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3525920 3528180 + Conep10aG0072000.1 Cone10ag0700 446498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0700 423 MobiDBLite consensus disorder prediction 83 115 - -
Cone10ag0700 423 Coils Coil 396 416 - -
Cone10ag0700 423 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 143 239 IPR053932 -
Cone10ag0700 423 Coils Coil 193 213 - -
Cone10ag0700 423 PANTHER BNAANNG10740D PROTEIN-RELATED 19 419 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone10ag0700 423 MobiDBLite consensus disorder prediction 245 308 - -
Cone10ag0700 423 MobiDBLite consensus disorder prediction 87 115 - -
Cone10ag0700 423 MobiDBLite consensus disorder prediction 1 62 - -
Cone10ag0700 423 MobiDBLite consensus disorder prediction 257 276 - -
Cone10ag0700 423 MobiDBLite consensus disorder prediction 12 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0700 Cone-Chr10:3525920 Cone1ag0501 Cone-Chr1:4879588 6.73E-12 dispersed
Cone8ag1459 Cone-Chr8:11236887 Cone10ag0700 Cone-Chr10:3525920 2.80E-18 transposed
Cone1ag1730 Cone-Chr1:58078486 Cone10ag0700 Cone-Chr10:3525920 8.54E-43 wgd
Cone10ag0700 Cone-Chr10:3525920 Cone3ag0718 Cone-Chr3:3677442 6.80E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44214 PF07797 DUF1639 3.30E-23 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0700 - - - 0.0