Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0700 ATGACTTCTTCTGAACAACAGCACGACACCGTTTTCCCCGACGAAGACCTTGACGACGATGGAGCTTCGCTCGACGACGACGAAGACGACGACGATGATGACGACGAAGAAGAAGAATTGGAATTGTTGAACGACGACCCGTTGGTCGACGACGACGTCATCTCTCCCTCGCCCTCCACGTCATCCTTCGCCACGGCTACCGTCGCTGATGCTGCAGCCACTGTTACCGTCGCGATTCCTAGCGCTGCTGTAGTTCCTAACTCCGATCCTCCTAAATCCACCGCGACTACCGCATCGACTGTCGCTGCTAGTTCGTCCGATCTTAATAAACGGCCGCGGTTTAATACTCCGATGTCAACGATGAAAATTGAGGCTGTGATTTTACCGCAGGAGGAGAAGAAGCCGTTGGATGAGTCTCGGAAGCTTTTTCAGCGGCTTTGGACCGATGAGGATGAGATCGAACTCTTACAAGGGTTTCTCGATTACACGACTCAGCGAGGATCTACTCAACATCACCAGAACGATACCGCTTTATTTTACGATCAGATTAAATCCAAGCTTCAGCTGGATTTCAACAAGAATCAGCTTGTCGAGAAGCTTCGGAGGCTGAAGAAGAAGTATCGAAATGTTATGAGTAAGATCAGCTCCGGCAAAGAAGTCAGTTTCAAAAGCGCTCACGATCACGCCACCTTTCAAATATCTCGCAAGATCTGGGGCGATACTGGCCGAATTGGAGCAGAGGATAATGCTCTAGACGATGAAGATCCGAATTCTAACCCTAATTTCCATCATATTGAACCAAAGGACGAGGAAATGGCGGGATATAGTGCGGAGAAGAAGGCAGGAATCACACCAAGATCGAGGAAGCGATCCAGGCCTGGATCAGGATTGAGAACCGAAGAAACACCTGCTTCAAACGAGATTACGAACAGAGATAAGATATGTGTTGACAATAACAGCAATGTGAATAACATTTCAGGGGTGATTGAGGAGACAGTTAGAAGTTGTTTGTCTCCATTGTTCAAGGAGTTGTTGAATGGTGCAATGGGAAATCCATGTGGATCAAGGGCATATTCTGGATTGGCATCAAATCCTATACCCATGAGTTTCGGTCCAGGGTCGTTGAATTTTGGTAGCGGAGGGGAAATTGTAGATGATAGATGGAGAAAGCAGCAGATTTTGGAGCTGGAGGTTTATTCAAAGCGGCTTGAGCTGGTTCAGGATCAAATAAAGGTGGCACTCAATGAATTGCGATCCATGGGGGGGAGGTGA 1272 47.8 MTSSEQQHDTVFPDEDLDDDGASLDDDEDDDDDDDEEEELELLNDDPLVDDDVISPSPSTSSFATATVADAAATVTVAIPSAAVVPNSDPPKSTATTASTVAASSSDLNKRPRFNTPMSTMKIEAVILPQEEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTTQRGSTQHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVSFKSAHDHATFQISRKIWGDTGRIGAEDNALDDEDPNSNPNFHHIEPKDEEMAGYSAEKKAGITPRSRKRSRPGSGLRTEETPASNEITNRDKICVDNNSNVNNISGVIEETVRSCLSPLFKELLNGAMGNPCGSRAYSGLASNPIPMSFGPGSLNFGSGGEIVDDRWRKQQILELEVYSKRLELVQDQIKVALNELRSMGGR 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3525920 3528180 + Conep10aG0072000.1 Cone10ag0700 446498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0700 423 MobiDBLite consensus disorder prediction 83 115 - -
Cone10ag0700 423 Coils Coil 396 416 - -
Cone10ag0700 423 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 143 239 IPR053932 -
Cone10ag0700 423 Coils Coil 193 213 - -
Cone10ag0700 423 PANTHER BNAANNG10740D PROTEIN-RELATED 19 419 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone10ag0700 423 MobiDBLite consensus disorder prediction 245 308 - -
Cone10ag0700 423 MobiDBLite consensus disorder prediction 87 115 - -
Cone10ag0700 423 MobiDBLite consensus disorder prediction 1 62 - -
Cone10ag0700 423 MobiDBLite consensus disorder prediction 257 276 - -
Cone10ag0700 423 MobiDBLite consensus disorder prediction 12 48 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0700 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0700 Cone-Chr10:3525920 Cone1ag0501 Cone-Chr1:4879588 6.73E-12 dispersed
Cone8ag1459 Cone-Chr8:11236887 Cone10ag0700 Cone-Chr10:3525920 2.80E-18 transposed
Cone1ag1730 Cone-Chr1:58078486 Cone10ag0700 Cone-Chr10:3525920 8.54E-43 wgd
Cone10ag0700 Cone-Chr10:3525920 Cone3ag0718 Cone-Chr3:3677442 6.80E-233 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0718 . 126 341 GeBP Transcription Factor Family AT3G04930 54.0 3.1e-52 203.4
Cone10ag0700 . 132 347 GeBP Transcription Factor Family AT3G04930 52.5 1.2e-51 201.4
Cone10ag0700 . 132 420 GeBP Transcription Factor Family AT5G28040 50.5 6.3e-67 252.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44214 PF07797 DUF1639 3.30E-23 No_clan Cone TF