Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0745 ATGGACCAGCAAGGGCATAACCAAAGTCCACCAATGGGGGTAGTCGGCAGTGGACCCCAATTGCCATACGGCACTAATCTTTACCAACCTACTCAAATTACTGGAACGCCCCCAGGATCAGTTGTTACAACTGTTCCAGGTCAACCCAGTGGGCCCCCTTATTCTCAACACCAGCTCGCTTACCAACACATCCACCAGCAACAACAACAGCAACTCCAACAACAGCTCCAAAACTTTTGGGCCAATCAGTACCAAGAAATCGAACGAGTGACTGATTTCAAGAACCATAGCCTTCCCTTAGCAAGGATCAAGAAGATCATGAAAGCTGATGAGGATGTGAGAATGATATCAGCCGAGGCGCCGGTCATATTTGCCCGAGCTTGTGAGATGTTCATCTTGGAGTTGACTTTAAGGTCTTGGAATCACACAGAAGAGAATAAGAGGAGGACCCTTCAGAAGAACGATATTGCGGCAGCTATTACGAGGACCGATATCTTTGACTTTTTGGTGGATATTGTGCCGAGGGAGGATTTGAAGGATGAAGTGTTGACTTCGATTCCGAGAGGAACAGTTCCGGTTGGGGGGGTGCCAGATGCGATGTCCTATTACCACATGCCACCTCAACATGGGCCTTCTCCTCAGGTTGCGCCTGGGCCCGGGATGATGATGGGTAAGCCTCTGATGGATCAATCGATGTATGCTCAGCAGGCTCCTCATGCATACTTGCCCCCACAAATGTGGCAGCCACCTCCACCTGATCAACAGCCATCTCCTTCGGATCATTAA 786 49.62 MDQQGHNQSPPMGVVGSGPQLPYGTNLYQPTQITGTPPGSVVTTVPGQPSGPPYSQHQLAYQHIHQQQQQQLQQQLQNFWANQYQEIERVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGTVPVGGVPDAMSYYHMPPQHGPSPQVAPGPGMMMGKPLMDQSMYAQQAPHAYLPPQMWQPPPPDQQPSPSDH 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3757038 3759362 - Conep10aG0076700.1 Cone10ag0745 446543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0745 261 MobiDBLite consensus disorder prediction 1 21 - -
Cone10ag0745 261 MobiDBLite consensus disorder prediction 230 261 - -
Cone10ag0745 261 MobiDBLite consensus disorder prediction 243 261 - -
Cone10ag0745 261 SUPERFAMILY Histone-fold 65 169 IPR009072 GO:0046982(InterPro)
Cone10ag0745 261 FunFam Nuclear transcription factor Y subunit gamma 62 175 - -
Cone10ag0745 261 Gene3D Histone, subunit A 59 175 IPR009072 GO:0046982(InterPro)
Cone10ag0745 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 70 201 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cone10ag0745 261 Pfam Core histone H2A/H2B/H3/H4 58 160 IPR007125 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0745 Cone-Chr10:3757038 Cone10ag1432 Cone-Chr10:11150110 1.51E-75 dispersed
Cone1ag1761 Cone-Chr1:58245827 Cone10ag0745 Cone-Chr10:3757038 4.49E-93 transposed
Cone10ag0745 Cone-Chr10:3757038 Cone3ag0756 Cone-Chr3:3923223 8.88E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44215 PF08700 Vps51 8.00E-16 CL0295 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0745 K08066 - vvi:100258035 329.331