Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0749 ATGGCATTAGAAACTGTGGTTTACCCACAAGACCCATTTAGCTATATGAACAGCAAAGACATCTACAGCTTTTTAGAAGGAGGGATCTGGCCTAGCTTCAATGAAGACAACGATTTTCTCGAGAACCAAACGGAGAATTCTCCTTATGGTCATGATAGTTGGAATTCTTCTTCGGGTGTACCGTTTCTAATGGTGCCGGCCGAGCGCTTTAACAATATTCCTTCATCCGAAAGGTTTGACTGTTTAGATGGGTTAATTCTTGATCATGAGAAAACCGATCAGTTGGAGCTTACATCGAGCAGTACTGCCGATCAAAATCGTCGAAGAAGACGGAGAACGAAAGCCCAGAAGAACAAAGACGAAATTGAGAATCAAAGAATGACCCACATTGCTGTTGAAAGAAACAGAAGGAAGCTAATGAATCAGTATCTCTCTGTCCTTAGATCCTTAATGCCAGATTCTTATGTCCAAAGGGGTGACCAAGCTTCAATCATAGGTGGTGCAATTAACTTTGTGAAAGAGCTAGAGCAAAAGGTACAGTTCCTTGGAGCTCAAACTACAGACCATGAACATAACCATAATCATGATGATCATATGAAGACAACTAATTCAAATATTGGGGCTAGCAGTAGTAGCAGTTCTCTTTCTTCCTTGTCCCACTATTTCTCACAACACTTTACCTTCCCACAATACTCATCAACCTCAATGGGATCCATTGCTGACATAGAGGTTAACATAGCAGAAAGCCATGCCAACATCAAGGTAAGGTCTAAGAGAAGGCCTAAGCAGCTCTTGAAGCTGGTCACTGGGTTGCAGACCTTGAGGCTCACCATTCTTCACCTCAATGTCTCTACAATGGACCCTGTTGTGCTCTACTGTCTCAATGTCAAGGTAGAGGATGATTGCAAGCTTGCTACAGTGGATGAAATTGCAACAGCTGTTTATCAGTTGATTTGTAGAATTCATGAAGAGGCAATGTTGAATATGTGA 990 41.92 MALETVVYPQDPFSYMNSKDIYSFLEGGIWPSFNEDNDFLENQTENSPYGHDSWNSSSGVPFLMVPAERFNNIPSSERFDCLDGLILDHEKTDQLELTSSSTADQNRRRRRRTKAQKNKDEIENQRMTHIAVERNRRKLMNQYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQKVQFLGAQTTDHEHNHNHDDHMKTTNSNIGASSSSSSLSSLSHYFSQHFTFPQYSSTSMGSIADIEVNIAESHANIKVRSKRRPKQLLKLVTGLQTLRLTILHLNVSTMDPVVLYCLNVKVEDDCKLATVDEIATAVYQLICRIHEEAMLNM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3791513 3793181 + Conep10aG0077100.1 Cone10ag0749 446547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0749 329 MobiDBLite consensus disorder prediction 96 125 - -
Cone10ag0749 329 SMART finulus 130 181 IPR011598 GO:0046983(InterPro)
Cone10ag0749 329 MobiDBLite consensus disorder prediction 188 209 - -
Cone10ag0749 329 PANTHER MAX DIMERIZATION, MAD 77 320 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone10ag0749 329 Gene3D - 114 205 IPR036638 GO:0046983(InterPro)
Cone10ag0749 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 175 IPR011598 GO:0046983(InterPro)
Cone10ag0749 329 Pfam Helix-loop-helix DNA-binding domain 125 176 IPR011598 GO:0046983(InterPro)
Cone10ag0749 329 Coils Coil 105 125 - -
Cone10ag0749 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 191 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0749 Cone-Chr10:3791513 Cone20ag0528 Cone-Chr20:2865702 5.31E-65 dispersed
Cone10ag0749 Cone-Chr10:3791513 Cone3ag0750 Cone-Chr3:3894037 3.72E-109 wgd
Cone10ag0749 Cone-Chr10:3791513 Cone5ag0020 Cone-Chr5:133301 3.42E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44216 PF10369 ALS_ss_C 2.10E-25 CL0070 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0749 - - - 0.0