Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0770 ATGGCTGATTACGAGCAAGAAAAGTTGCTTCCGGTAGCAAATGTGGGGAGAATCATGAAGCAAATCCTTCCCTCAAGTGCAAGGATTTCCAAGGAAGCCAAACAAACAATGCAAGAATGTGCCACAGAGTTCATAAGCTTTGTGACCGGTGAAGCGTCTGACAAATGTCACAAGGAGAATCGCAAGACGGTGATCGGTGACGACATCTGTTGGGCTTTGAGCACTCTAGGGCTTGACAATTATGCCGAGGCTATCATTAGGTACTTTTATAAATACAGAGAGGCTGAAATGAAGAAGGTTAATAGTAGAAACAAAGGCAGCACTTCTCAAGAAAGAGAAGAAGATGATCGAGAGGAAGATGACGACGATGAAGAACCGATCGGCAATGGACATCGAATGCAGTACGAGATGCAAACTAGGGTTTTCAACAGGGGTGAAAGCTCAATTCGAAGATCAAATTGA 462 43.94 MADYEQEKLLPVANVGRIMKQILPSSARISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVIGDDICWALSTLGLDNYAEAIIRYFYKYREAEMKKVNSRNKGSTSQEREEDDREEDDDDEEPIGNGHRMQYEMQTRVFNRGESSIRRSN 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3905216 3905677 - Conep10aG0079200.1 Cone10ag0770 446568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0770 153 SUPERFAMILY Histone-fold 6 123 IPR009072 GO:0046982(InterPro)
Cone10ag0770 153 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone10ag0770 153 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Cone10ag0770 153 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Cone10ag0770 153 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Cone10ag0770 153 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 128 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone10ag0770 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
Cone10ag0770 153 Gene3D Histone, subunit A 1 138 IPR009072 GO:0046982(InterPro)
Cone10ag0770 153 MobiDBLite consensus disorder prediction 99 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0770 Cone-Chr10:3905216 Cone5ag0958 Cone-Chr5:4086566 2.67E-49 dispersed
Cone10ag0770 Cone-Chr10:3905216 Cone14ag0770 Cone-Chr14:4418786 8.62E-40 wgd
Cone10ag0770 Cone-Chr10:3905216 Cone20ag0927 Cone-Chr20:6668636 3.53E-42 wgd
Cone10ag0770 Cone-Chr10:3905216 Cone3ag0792 Cone-Chr3:4075231 4.57E-66 wgd
Cone10ag0770 Cone-Chr10:3905216 Cone5ag0034 Cone-Chr5:205068 6.42E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44218 PF04398 DUF538 6.50E-31 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0770 K08065 - mdm:103423558 171.785