Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag0770 | ATGGCTGATTACGAGCAAGAAAAGTTGCTTCCGGTAGCAAATGTGGGGAGAATCATGAAGCAAATCCTTCCCTCAAGTGCAAGGATTTCCAAGGAAGCCAAACAAACAATGCAAGAATGTGCCACAGAGTTCATAAGCTTTGTGACCGGTGAAGCGTCTGACAAATGTCACAAGGAGAATCGCAAGACGGTGATCGGTGACGACATCTGTTGGGCTTTGAGCACTCTAGGGCTTGACAATTATGCCGAGGCTATCATTAGGTACTTTTATAAATACAGAGAGGCTGAAATGAAGAAGGTTAATAGTAGAAACAAAGGCAGCACTTCTCAAGAAAGAGAAGAAGATGATCGAGAGGAAGATGACGACGATGAAGAACCGATCGGCAATGGACATCGAATGCAGTACGAGATGCAAACTAGGGTTTTCAACAGGGGTGAAAGCTCAATTCGAAGATCAAATTGA | 462 | 43.94 | MADYEQEKLLPVANVGRIMKQILPSSARISKEAKQTMQECATEFISFVTGEASDKCHKENRKTVIGDDICWALSTLGLDNYAEAIIRYFYKYREAEMKKVNSRNKGSTSQEREEDDREEDDDDEEPIGNGHRMQYEMQTRVFNRGESSIRRSN | 153 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 3905216 | 3905677 | - | Conep10aG0079200.1 | Cone10ag0770 | 446568 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag0770 | 153 | SUPERFAMILY | Histone-fold | 6 | 123 | IPR009072 | GO:0046982(InterPro) | |
Cone10ag0770 | 153 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 40 | 56 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone10ag0770 | 153 | PRINTS | CCAAT-binding transcription factor subunit A signature | 75 | 93 | - | - | |
Cone10ag0770 | 153 | PRINTS | CCAAT-binding transcription factor subunit A signature | 56 | 74 | - | - | |
Cone10ag0770 | 153 | PRINTS | CCAAT-binding transcription factor subunit A signature | 37 | 55 | - | - | |
Cone10ag0770 | 153 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 5 | 128 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone10ag0770 | 153 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 10 | 73 | IPR003958 | - | |
Cone10ag0770 | 153 | Gene3D | Histone, subunit A | 1 | 138 | IPR009072 | GO:0046982(InterPro) | |
Cone10ag0770 | 153 | MobiDBLite | consensus disorder prediction | 99 | 153 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0770 | Cone-Chr10:3905216 | Cone5ag0958 | Cone-Chr5:4086566 | 2.67E-49 | dispersed | |
Cone10ag0770 | Cone-Chr10:3905216 | Cone14ag0770 | Cone-Chr14:4418786 | 8.62E-40 | wgd | |
Cone10ag0770 | Cone-Chr10:3905216 | Cone20ag0927 | Cone-Chr20:6668636 | 3.53E-42 | wgd | |
Cone10ag0770 | Cone-Chr10:3905216 | Cone3ag0792 | Cone-Chr3:4075231 | 4.57E-66 | wgd | |
Cone10ag0770 | Cone-Chr10:3905216 | Cone5ag0034 | Cone-Chr5:205068 | 6.42E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44218 | PF04398 | DUF538 | 6.50E-31 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag0770 | K08065 | - | mdm:103423558 | 171.785 |