Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0771 ATGAGTATAAGTAGTAGTGAAGATGGGAGCGTTTCTAATTTCGAAAACCACTGCGAATTTGAAGGTGATCAACAAGTAGTACTGAAAAAAGATGATCAAGTGGAGATGATGATGATCAATCAATTTCATGAATCAAAGTCCTTCTCTCCAACTTCTACTACTGCTACTAATAATACTAAGAAGAAAAGGAACTTACCAGGAAATCCTGACCCGAACTCTGAAGTGATTGCGCTTTCCCCGAAGACGCTAATGGCGAAGAACAGGTTCGTGTGCGAGATTTGCAACAAGGGATTTCAGAGGGATCAGAACCTACAACTTCACAGGAGAGGGCATAACCTGCCATGGAAGCTGAAGTTAAGAGCGAGCAATGAACTGAACAGGAAGAAAGTGTATGTCTGTCCGGAACCCTCGTGTGTTCATCACAATCCATGTAGGGCATTGGGTGATCTTACAGGAATCAAGAAGCATTTCTCTAGGAAACATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGACTTGTGGCAGTAGAGAGTACAAATGTGATTGTGGCACCATCTTCTCCAGGAGAGATAGTTTTATAACTCACAGAGCATTCTGTGATGCCTTAGTAAGTGAAGTAAACAAGAACAGAGCAAATCAACAAGACAATGGAGATCAGCAAGCTTCTCATATGATAGAAGAGCCAAGACTAAGCATAGAAAGCAGCCAATTGCAGTGTCATGATCTTCTATTGTCACAACTAGTACCACTCATGGACAGCAGCACCAATCAAAATTCCTCAAAATCAGGCAAATTAAGCATATTCCCAAGCAGAACCAATAATGGTATCAGTAACAATGTTTCATCATCATCAGCAGCAGCAACAGCAACAAAAAACATCTTTGAAGCAAAATTGGGACTTGACCAATTGATATCTAGTCCAAGAAGCAGCCTCCACTACTCAGCCACTGCGCTTCTTCAGAAAGCAGCTCAAATGGGTGCAGCTGTGAGTACTAGTACTAGTAATGCTACTTCTACAAGCATTATGGCACCTTCTTCATTTGGTTCTCATGGATTGTTAATGTCCCAAATGAACCAACCTCTAGAAGGTACCATGTCGGATCATCATTTCTTCGATGTTAATATGGGTTCGGGGGCTTTTAACTGGTTATTTGGTAGTCAAGATGATCAGAAGTACAACAATATTGAGTTTTTGAAGGATGTGAAGAATTTGAGCAATAATGTTTGCAGTAGTAGTACTAATGGTGATCATCATGAGGGGTTTTTGCATTGTGGAAATTCAAATGGAGGGTCAATGACATTGGATTTGTTGAGGAATGAAGGAGTAAGTTACCACGACTCGGAATCTTTCCGGGACACAGGATCTTAG 1413 40.91 MSISSSEDGSVSNFENHCEFEGDQQVVLKKDDQVEMMMINQFHESKSFSPTSTTATNNTKKKRNLPGNPDPNSEVIALSPKTLMAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRASNELNRKKVYVCPEPSCVHHNPCRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGSREYKCDCGTIFSRRDSFITHRAFCDALVSEVNKNRANQQDNGDQQASHMIEEPRLSIESSQLQCHDLLLSQLVPLMDSSTNQNSSKSGKLSIFPSRTNNGISNNVSSSSAAATATKNIFEAKLGLDQLISSPRSSLHYSATALLQKAAQMGAAVSTSTSNATSTSIMAPSSFGSHGLLMSQMNQPLEGTMSDHHFFDVNMGSGAFNWLFGSQDDQKYNNIEFLKDVKNLSNNVCSSSTNGDHHEGFLHCGNSNGGSMTLDLLRNEGVSYHDSESFRDTGS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3915018 3917433 + Conep10aG0079300.1 Cone10ag0771 446569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0771 470 MobiDBLite consensus disorder prediction 41 73 - -
Cone10ag0771 470 SMART c2h2final6 131 161 IPR013087 -
Cone10ag0771 470 SMART c2h2final6 166 186 IPR013087 -
Cone10ag0771 470 SMART c2h2final6 89 111 IPR013087 -
Cone10ag0771 470 MobiDBLite consensus disorder prediction 41 66 - -
Cone10ag0771 470 Gene3D Classic Zinc Finger 145 224 - -
Cone10ag0771 470 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Cone10ag0771 470 Gene3D Classic Zinc Finger 67 135 - -
Cone10ag0771 470 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Cone10ag0771 470 FunFam protein indeterminate-domain 12-like 68 137 - -
Cone10ag0771 470 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Cone10ag0771 470 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 49 389 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone10ag0771 470 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Cone10ag0771 470 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 230 - -
Cone10ag0771 470 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Cone10ag0771 470 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Cone10ag0771 470 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0771 Cone-Chr10:3915018 Cone17ag0574 Cone-Chr17:2964295 6.96E-99 dispersed
Cone10ag0771 Cone-Chr10:3915018 Cone3ag0793 Cone-Chr3:4085646 6.02E-293 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44219 PF01380 SIS 3.80E-21 CL0067 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0771 - - - 0.0