Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag0804 | ATGGCATCGAGGAATCGAACTTTGCTTTATAGAAAATATAGGGATGCGTTGAAGAGCGTAAGAGTACCGGCGAGCTTTTCATCAGCTTCCGCATCGTCGTCGAGAAGTCAGGGAGCTCGTGGTCCGGTGATCGAAATGGTCAGCACTTCGCTTTTGAATCCGAATCGATCTTATGCTCCTCTCAGTACCGAGGATCCTGGTAATTCGAGTAAGGGTGCTCTTACTGTGGGCTTACCTCCTGCTTGGGTGGATTTCTCTGAAGAAATAACATCGAATGTTCAACAGGCACGGTTAAAAATGGCTGAGTTAGCCAAAGCTCATGCAAAGGCTCTAATGCCTTCATTTGGGGATGGAAAAGAAGATCAAAAATTGATTGAATCTCTTACACATGAGATAACTAATCTGATAAGGAAATCGGAGAAGAGATTGCAGAGACTCTCTGCAGGTGGACCTTCTGAAGATTCAAGTGTTAGAAAAAATGTACAGCGGTCACTTGCAACTGACCTTCAAACACTTTCAATGGAGCTTCGCAAGAAACAATCGGTTTACTTGAAGCAGCTCAGGCAGCAAAAAGAGGGTCAAGATGGGGTTGATTTAGAGATGAATCTAAATGGAAATAGATCTGGAATGAAGGATGATGAATTAGACAACATGGTATTCAGTGAGCATCAGATGGCCAAGCTTAAAAAGAGTGAAGCATTTACAGCAGAAAGGGAGAGAGAGATCCAACAGGTTGTAGAATCTGTAAATGAGCTTGCCCAGATAATGAAGGATCTATCAGTACTCGTAATAGACCAGGGAACCATTGTTGATAGGATTGACCACAATATTCAAGCTGTTGCAACTACAGTTGATGACGGCCTTAAGCAGCTAGAAAAGGCTGAGAGAACACAGAAGAAAGGGGGAATGGTAATGTGTGCATCCGTGCTTATTATTATGTGTTTTGTCATGTTGGTCCTCCTGATTCTTAAGGAGATATTCTTTTGA | 987 | 42.65 | MASRNRTLLYRKYRDALKSVRVPASFSSASASSSRSQGARGPVIEMVSTSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDFSEEITSNVQQARLKMAELAKAHAKALMPSFGDGKEDQKLIESLTHEITNLIRKSEKRLQRLSAGGPSEDSSVRKNVQRSLATDLQTLSMELRKKQSVYLKQLRQQKEGQDGVDLEMNLNGNRSGMKDDELDNMVFSEHQMAKLKKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDHNIQAVATTVDDGLKQLEKAERTQKKGGMVMCASVLIIMCFVMLVLLILKEIFF | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4080924 | 4084354 | + | Conep10aG0082800.1 | Cone10ag0804 | 446602 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag0804 | 328 | Coils | Coil | 86 | 106 | - | - | |
Cone10ag0804 | 328 | PANTHER | SYNTAXIN | 87 | 312 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cone10ag0804 | 328 | SUPERFAMILY | t-snare proteins | 78 | 287 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cone10ag0804 | 328 | Gene3D | - | 79 | 286 | - | - | |
Cone10ag0804 | 328 | SMART | tSNARE_6 | 227 | 294 | IPR000727 | - | |
Cone10ag0804 | 328 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 232 | 294 | IPR000727 | - | |
Cone10ag0804 | 328 | Pfam | SNARE domain | 268 | 320 | IPR000727 | - | |
Cone10ag0804 | 328 | FunFam | Syntaxin-43 | 79 | 286 | - | - | |
Cone10ag0804 | 328 | ProSitePatterns | Syntaxin / epimorphin family signature. | 238 | 277 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cone10ag0804 | 328 | CDD | SNARE_syntaxin16 | 236 | 293 | - | - | |
Cone10ag0804 | 328 | SMART | SynN_4 | 73 | 188 | IPR006011 | GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0804 | Cone-Chr10:4080924 | Cone17ag0442 | Cone-Chr17:2078757 | 3.28E-150 | dispersed | |
Cone10ag0804 | Cone-Chr10:4080924 | Cone20ag0971 | Cone-Chr20:6911166 | 2.37E-65 | wgd | |
Cone10ag0804 | Cone-Chr10:4080924 | Cone3ag0826 | Cone-Chr3:4239376 | 2.90E-197 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag0804 | K08489 | - | cit:102612546 | 526.939 |