Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0804 ATGGCATCGAGGAATCGAACTTTGCTTTATAGAAAATATAGGGATGCGTTGAAGAGCGTAAGAGTACCGGCGAGCTTTTCATCAGCTTCCGCATCGTCGTCGAGAAGTCAGGGAGCTCGTGGTCCGGTGATCGAAATGGTCAGCACTTCGCTTTTGAATCCGAATCGATCTTATGCTCCTCTCAGTACCGAGGATCCTGGTAATTCGAGTAAGGGTGCTCTTACTGTGGGCTTACCTCCTGCTTGGGTGGATTTCTCTGAAGAAATAACATCGAATGTTCAACAGGCACGGTTAAAAATGGCTGAGTTAGCCAAAGCTCATGCAAAGGCTCTAATGCCTTCATTTGGGGATGGAAAAGAAGATCAAAAATTGATTGAATCTCTTACACATGAGATAACTAATCTGATAAGGAAATCGGAGAAGAGATTGCAGAGACTCTCTGCAGGTGGACCTTCTGAAGATTCAAGTGTTAGAAAAAATGTACAGCGGTCACTTGCAACTGACCTTCAAACACTTTCAATGGAGCTTCGCAAGAAACAATCGGTTTACTTGAAGCAGCTCAGGCAGCAAAAAGAGGGTCAAGATGGGGTTGATTTAGAGATGAATCTAAATGGAAATAGATCTGGAATGAAGGATGATGAATTAGACAACATGGTATTCAGTGAGCATCAGATGGCCAAGCTTAAAAAGAGTGAAGCATTTACAGCAGAAAGGGAGAGAGAGATCCAACAGGTTGTAGAATCTGTAAATGAGCTTGCCCAGATAATGAAGGATCTATCAGTACTCGTAATAGACCAGGGAACCATTGTTGATAGGATTGACCACAATATTCAAGCTGTTGCAACTACAGTTGATGACGGCCTTAAGCAGCTAGAAAAGGCTGAGAGAACACAGAAGAAAGGGGGAATGGTAATGTGTGCATCCGTGCTTATTATTATGTGTTTTGTCATGTTGGTCCTCCTGATTCTTAAGGAGATATTCTTTTGA 987 42.65 MASRNRTLLYRKYRDALKSVRVPASFSSASASSSRSQGARGPVIEMVSTSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDFSEEITSNVQQARLKMAELAKAHAKALMPSFGDGKEDQKLIESLTHEITNLIRKSEKRLQRLSAGGPSEDSSVRKNVQRSLATDLQTLSMELRKKQSVYLKQLRQQKEGQDGVDLEMNLNGNRSGMKDDELDNMVFSEHQMAKLKKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDHNIQAVATTVDDGLKQLEKAERTQKKGGMVMCASVLIIMCFVMLVLLILKEIFF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4080924 4084354 + Conep10aG0082800.1 Cone10ag0804 446602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0804 328 Coils Coil 86 106 - -
Cone10ag0804 328 PANTHER SYNTAXIN 87 312 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone10ag0804 328 SUPERFAMILY t-snare proteins 78 287 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone10ag0804 328 Gene3D - 79 286 - -
Cone10ag0804 328 SMART tSNARE_6 227 294 IPR000727 -
Cone10ag0804 328 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 232 294 IPR000727 -
Cone10ag0804 328 Pfam SNARE domain 268 320 IPR000727 -
Cone10ag0804 328 FunFam Syntaxin-43 79 286 - -
Cone10ag0804 328 ProSitePatterns Syntaxin / epimorphin family signature. 238 277 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone10ag0804 328 CDD SNARE_syntaxin16 236 293 - -
Cone10ag0804 328 SMART SynN_4 73 188 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0804 Cone-Chr10:4080924 Cone17ag0442 Cone-Chr17:2078757 3.28E-150 dispersed
Cone10ag0804 Cone-Chr10:4080924 Cone20ag0971 Cone-Chr20:6911166 2.37E-65 wgd
Cone10ag0804 Cone-Chr10:4080924 Cone3ag0826 Cone-Chr3:4239376 2.90E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0804 K08489 - cit:102612546 526.939