Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0820 ATGGCTGTAGCAGCCCCAGGGCAGCTCAACCTCACTGAGACTCCTTCATGGGGATCTAGAAGCGTTGATTGCTTCGAAAAATTGGAACAGATTGGCGAGGGAACTTATGGTCAAGTTTACATGGCCAGAGAAATACAGACTGGAGAAATTGTTGCTTTGAAGAAAATACGGATGGACAATGAGAGAGAGGGGTTTCCTATTACTGCCATACGAGAAATCAAAATCCTAAAAAAGCTGCATCATGAAAATGTAATAAAGCTGAAAGAGATTGTGATGTCACCAGGTCCTGAGAAAGATGAGCAGGGAAAACCAGATGGGAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTTCTGATCGTCCTGGGATGAGATTTTCAGTTCCTCAGATTAAGTGCTACATGAAACAGCTTTTGACTGGGCTTTATTACTGCCATGTCAATCAAGTACTACATCGGGATATCAAAGGCTCTAATCTTCTTATAGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGGCTTGCTCGATCGTTCTCTAATGATCACAATGCTAATCTTACAAACCGTGTAATTACTTTGTGGTATAGACCTCCAGAGTTGCTGCTTGGGACAACAAGGTATGGCCCCGCTGTTGATATGTGGTCTGTTGGTTGTATCTTTGCCGAGCTTCTTCATGGGAAACCAATTTTCCCAGGTAAAGATGAGCCCGAGCAGTTAAATAAGATCTTTGAGCTGTGTGGAGCTCCCGATGAGGTTAATTGGCCTGGGGTTTCCAAGATTCCTTGGTATAACAATTTCAAACCTACAAGGCCGATGAAGAGACGACTTAGAGAGGTTTTCAGAAATTTTGACCGTCATGCTTTAGAGTTGTTGGAGAGGATGCTGACTCTTGATCCCTCTCAGAGGATATCTGCAAAAGACGCCCTTGATGCTGAGTACTTTTGGACTGACCCATTACCATGTGATCCCAAGAGTTTACCAAAATACGAATCATCCCACGAGTTCCAAACCAAGAAAAAGCGGCAGCAACAAAGACAGCATGAGGAAAATGCAAAACGTCAGAAATTGCAACACCCACAGCAACACACCCGCCTTCCGCCAATCCAGCAGTCGGGTCAAGCCCATGCCCAGTTACGGCCTGGCGCAAACCAGCCATTGCATAGCTCTCAACCCCAGGTTGCTGCTGGGGGTCCTGGTGGTCACCATTTTGGGAAGCCTCGTGGTGGACCCTCAGGTGGCCCGGGCCGATATCCAGTGAGCGGAAACCCTGCTGGAGGATACAACCACCCCAGTCGCCAAGGTGGTGGTGGTAGTGGTTATGGGGGAAGTGGCCAGTATCCTCAGGGTGGTGGTCGAGGTGCACCCTATGGCTCTAATGGTATGAGTGGTGCGGGTCCCAGGAGTGGGGGAGGTAGTGGGTATGGAGTTGGTGCTCCGCCAAACTACCCTCAGGGTGCTCCTTATGGTGGCTCTAGTGGTGGTGGCGGCCGTGGGTCAAACATGATGAGTGGAAGCCGGAACCAACAATATGGATGGCAGCAGTAA 1575 48.0 MAVAAPGQLNLTETPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIQTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVMSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLSDRPGMRFSVPQIKCYMKQLLTGLYYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRNFDRHALELLERMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQQHTRLPPIQQSGQAHAQLRPGANQPLHSSQPQVAAGGPGGHHFGKPRGGPSGGPGRYPVSGNPAGGYNHPSRQGGGGSGYGGSGQYPQGGGRGAPYGSNGMSGAGPRSGGGSGYGVGAPPNYPQGAPYGGSSGGGGRGSNMMSGSRNQQYGWQQ 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4167407 4172261 + Conep10aG0084400.1 Cone10ag0820 446618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0820 524 PANTHER CELL DIVISION PROTEIN KINASE 25 324 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone10ag0820 524 FunFam Cyclin-dependent kinase C-2 122 364 - -
Cone10ag0820 524 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0820 524 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Cone10ag0820 524 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Cone10ag0820 524 MobiDBLite consensus disorder prediction 337 366 - -
Cone10ag0820 524 FunFam Cyclin-dependent kinase C-2 12 121 - -
Cone10ag0820 524 SMART serkin_6 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0820 524 MobiDBLite consensus disorder prediction 335 524 - -
Cone10ag0820 524 MobiDBLite consensus disorder prediction 370 401 - -
Cone10ag0820 524 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Cone10ag0820 524 MobiDBLite consensus disorder prediction 506 524 - -
Cone10ag0820 524 CDD STKc_CDK9_like 25 324 - -
Cone10ag0820 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0820 524 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Cone10ag0820 524 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0820 Cone-Chr10:4167407 Cone1ag0408 Cone-Chr1:3554336 3.05E-295 dispersed
Cone10ag0820 Cone-Chr10:4167407 Cone3ag0846 Cone-Chr3:4340825 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81830 PF04757 Pex2_Pex12 7.60E-06 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0820 K08819 - mdm:103435440 896.345