Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0838 ATGGCAAGTGGTCTTAATGCAGGATTGTCCAAGAAAACTGGTGTTTTTGGTCTTATGGTCTGGGAAGTAATAGGGATTGCAGTTGGGTTGTTTATCTTGGTTATCCTCTCCGTACTTCCCTTGTGTCTTACTTCACGAAAGAAGCTTAGAAGAAGACGCAGAGATGAGTTTCTCCCAAGCCAAATCCCAATCTTATCAAAGGAGATCAAGGAAGTTCAAACAGATGAATCCATTCCTCGTGAAAGAATACCTCCGACCATTCACAATCATGATAAATCGAGCAACAAAGATTCCAATAAGGTTCTGGTCCATCTGGGTATGGGAAAGAGAACGAGTGAAGAGTCAGGTTGGTTTCATCATTTAGAGAAAGATGGTTTTGTTGGGTCTCAATCCGGTGAAAAAGAGAGTTCCAGCTCTGCTACTGAGTATGAACCTTCTTCCTTTCCGATCACAGTACAATCTCCACTATGTGGCCTTTCGGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACTTTACGGGATCTTGAGACTGCAACAAACTGTTTTTCGAGAGAGAATGTCCTAGGTGAAGGCGGTTATGGAGTTGTATACCAGGGACACTTAGCTAATGGGACTCCTGTAGCAGTTAAAAAGATTCTCAATAACCTAGGCCAAGCAGAGAAAGAGTTTCGAGCGGAAGTTGAGGCGATTGGCCACGTGCGTCATAAGAATTTGGTTCGTCTTTTGGGATATTGCATTGAAGGTACTCACAGGATGCTGGTGTATGAGTACGTGAACAATGGAAACCTAGAGCAGTGGCTTCATGGAGGTATGGGGGAATACGGGTATCTAACATGGGAGGCCCGCATGAAGATTATCCTTGGCACAGCTAAAGCGCTCGCATACTTGCATGAGGCCATTGAACCAAAGGTAGTGCACCGTGACATCAAGTCAAGCAATATACTGATCGATGACACGTTCAATGCCAAGGTGTCCGACTTTGGTCTAGCAAAGATGCTGGGTGCTGGCAAGAATCATATAATGACCCGGGTTATGGGGACCTTTGGATATGTGGCTCCCGAATATGCAAATAGTGGTCTTTTAAATGAAAAGATCGATGTCTATAGCTTTGGTGTTCTTCTTTTAGAGGCAGTTACTGGAAGAGATCCTGTGGACTATGGCCGGCCAGCTCGGGAGGTTAATCTCATTGACTGGCTGAAAACGATGGTTGGAAGCAGGCAATCAGAACAAGTGGTAGACCCAAACATAGAGGCAAGGCCATCAACAAGAGCCTTAAAACGAGCTCTCTTGACTGCTTTAAGGTGTGTTGATCCAGATAATGAAAAGAGGCCAACAATGGGCCAAGTTGTTCGAATGCTCGAGTCCGAAGAATATCCCATACCTCGAGAGGATCGAAGGCACCGAAGAAGTCAGGCAGATAACACGGAGATTGAGTCCTTAAGGGAATGTTCTGATGCTGTTCCGAATGAAAATCCAGCTTCAAGTAGACACAACCAACAAACATAA 1509 44.93 MASGLNAGLSKKTGVFGLMVWEVIGIAVGLFILVILSVLPLCLTSRKKLRRRRRDEFLPSQIPILSKEIKEVQTDESIPRERIPPTIHNHDKSSNKDSNKVLVHLGMGKRTSEESGWFHHLEKDGFVGSQSGEKESSSSATEYEPSSFPITVQSPLCGLSEFSHLGWGHWFTLRDLETATNCFSRENVLGEGGYGVVYQGHLANGTPVAVKKILNNLGQAEKEFRAEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGGMGEYGYLTWEARMKIILGTAKALAYLHEAIEPKVVHRDIKSSNILIDDTFNAKVSDFGLAKMLGAGKNHIMTRVMGTFGYVAPEYANSGLLNEKIDVYSFGVLLLEAVTGRDPVDYGRPAREVNLIDWLKTMVGSRQSEQVVDPNIEARPSTRALKRALLTALRCVDPDNEKRPTMGQVVRMLESEEYPIPREDRRHRRSQADNTEIESLRECSDAVPNENPASSRHNQQT 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4250465 4253833 - Conep10aG0086300.1 Cone10ag0838 446636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0838 502 PANTHER OS01G0323000 PROTEIN 1 479 IPR052232 -
Cone10ag0838 502 MobiDBLite consensus disorder prediction 458 502 - -
Cone10ag0838 502 SUPERFAMILY Protein kinase-like (PK-like) 167 464 IPR011009 -
Cone10ag0838 502 SMART serkin_6 183 454 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0838 502 ProSitePatterns Protein kinases ATP-binding region signature. 189 212 IPR017441 GO:0005524(InterPro)
Cone10ag0838 502 Gene3D Phosphorylase Kinase; domain 1 162 258 - -
Cone10ag0838 502 MobiDBLite consensus disorder prediction 130 146 - -
Cone10ag0838 502 Pfam Protein kinase domain 184 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0838 502 ProSiteProfiles Protein kinase domain profile. 183 460 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0838 502 MobiDBLite consensus disorder prediction 458 481 - -
Cone10ag0838 502 CDD STKc_IRAK 189 455 - -
Cone10ag0838 502 MobiDBLite consensus disorder prediction 126 146 - -
Cone10ag0838 502 Gene3D Transferase(Phosphotransferase) domain 1 259 471 - -
Cone10ag0838 502 FunFam Putative receptor-like protein kinase 165 258 - -
Cone10ag0838 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0838 502 FunFam Putative receptor-like serine/threonine-protein kinase 259 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0838 Cone-Chr10:4250465 Cone3ag1487 Cone-Chr3:33526021 2.03E-207 dispersed
Cone1ag1578 Cone-Chr1:57478311 Cone10ag0838 Cone-Chr10:4250465 4.21E-257 wgd
Cone10ag0838 Cone-Chr10:4250465 Cone14ag0675 Cone-Chr14:3469790 1.87E-48 wgd
Cone10ag0838 Cone-Chr10:4250465 Cone20ag1003 Cone-Chr20:7052299 1.44E-85 wgd
Cone10ag0838 Cone-Chr10:4250465 Cone5ag0098 Cone-Chr5:454772 2.95E-257 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81831 PF02373 JmjC 1.20E-44 CL0029 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0838 - - - 0.0