Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0847 ATGGATCACCGAATAAAGATATTTCTGGTGCTTATTATTCTCGTACAACTTTCGGTTCATGTAACGGCTCAAACATCCACTTCGGACTCGATCGTGCTAAACTCTCTAACGCAAGGATGGGAGAACACTCCAAATAGCTGGGTTGGTTCAGATCCATGTGGTAGCAATTGGGATGGAATTACTTGCAACAATTCACGAATAATCTCCATAACATTATCTAGCATCGGTCTGAAAGGACAGCTTTCTGGAGACATCGGATCTTTGTCCGAGTTAACAACATTGGACCTATCCTACAACAGTGAAATGACCGGACCGCTTCCTGCGTCTATTGGGAATTTGGCTAAGCTATATAACTTAATCCTCGTGGGGTGTAGTTTTTCCGGCTCTATACCAGAAACGATAGGATCGTTACAGCAGCTGGTATTTCTATCTTTAAATTCAAATAGGTTCAGTGGAAAAATCCCGGCTTCCATAGGTAAGCTGCCGAAACTTTATTGGCTGGACCTAGCTGATAATCAGCTTGATGGACCCATTCCGGTCTCTTCTGGCACCACCCCTGGTCTTGACTTGCTAGTTACGGCAAAGCATTTTCATTTCGGAAAGAATCAGCTATCAGGGGCAATTCCACCTAAACTCTTCAACCCGAAAATGATACTGATACATGTGCTTTTCGAGAGTAATCAACTAACTGGCAGCATCCCTACCACCATAGCATCTGTTAAGTCCTTGGAGGTGGTGCGCTTTGATCGGAACAACTTAAACGGGCCCGTGCCTTCCAATCTCAGCAGTCTTACAAATATTACCGAGCTATTTCTGTCCAACAATAAGCTAACCGGACCATTACCCAACCTGAATGGGATGAATCAACTAAGTTCTGTGGACATGAGCAACAATAGTTTTGATGCATCTGATATCCCTTCATGGTTTTCAACCTTGTCATCATTGACAACATTAAAGATGGACAATACACAACTTCAAGGACAGGTCCCGACGTCTCTGTTCGGCCTTTCTAATCTGCAGACCGTAGTACTAAGCAGAAACAATCTGAACGGCTCATTGGATCTTGGGATTTCTATCAGCAACCGACTGGGACTTATCGATATGCGAAAAAATAAGATAACAGAGGTTAACAATAAAGGATACAGCTCCACCTTAATACTTGTAGACAACCCGGTTTGTCAAGAATCTGAAGCTGTAGAGACTTACTGCACGATTCCGCCACCCAAGTCCTCATACTATTCTACTCCGCCTAACAACTGCTTGCCTGTTTCATGTAACTCACATGCGACTTCTAGCCCGAAGTGTCTATGTGCATTCCCATATACGGGCACTCTAGTCTTCAGAGCTCCTTCTTTCTCCGACTTGGGAATATCAAGTTATTTTGTATCTCTTGAGAAGTCTCTCATTCAATCCTTTCTATCAAACAAGCTTCCGGTAGATTCGGTTGCCCTCTCTGAGCCCTTCATGGATTCGGTTAACTATCTTGATATACATTTATCAGTGTTTCCTTCTGGCGACGATCAGTTCAATCAGACTGGGATTTCCAGGGTTGGATTTGTTCTAAGCAACCAGACTTTCAAGCCTCCTTCGAGTTTCGGACCGTTTTACTTCGAGGCAGATGCTTATCAGTATGATACGGTATCTACTGGATCGAGCAAGTCGAGCAATACTGTAATAATTGGAGCAGCAGTTGGCGGTTCTCTCCTAGTGGTGTTATTGGTTATTGCAGCTTTATATGCTTTCCACCAAAAAAGACAAGCAGAAAGAGCTACTGAACTGCAAAATCCTTTTGCACAATGGGATGCCACTAAAAGCAGTGGTCCAGTTCCTCAATTGAAGGGAGCAAGATGGTTCTCATTCGAAGAGCTGAAGAAATGCACGAACAATTTTGGAGATGCAAATGATGTTGGATCGGGAGGTTATGGGAAGGTTTATCGTGGAACGCTTCCATCCGGACAACTGGTTGCGATCAAACGAGCACAAAAGGAATCAATGCAGGGCGGGCTCGAGTTCAAAACCGAGATCGAACTCCTATCAAGGGTCCACCATAAGAACCTAGTCAGCCTTCTTGGTTTTTGCTTTGAGCAAGGCGAACAAATGCTGGTGTACGAGTATGTTGCAAATGGCAATCTCAAGGATAGTCTTACGGGGAAGTCCGGAATCAGGCTAGACTGGATGAGGAGACTTAAAATAGCAGGTGGTGCAGCCAGAGGGCTATTGTATCTTCATGAACTAGCTGACCCTCCTATCATACATAGGGACGTTAAATCAAATAACATTCTACTGGACGGGCATTTAAATGCAAAAGTTTCCGATTTTGGCCTCTCCAAACTTATGGTTGATTCTGAGAGGGATCATGTCACCACTCAAGTCAAAGGAACAATGGGCTACTTGGACCCGGAATATTACATGACACAGCAGCTAACAGAGAAGAGTGATGTTTACGGCTTTGGCGTGGTAATGTTGGAGCTGATAACTGCAAGAAGGCCAATAGAGCGAGGCAAGTACATAGTGAGGGAGGTAAGGATGGCAATGGATAAAACGAAAGATCGATACAACCTGCAAGAAATTCTTGACCCGGCTATAAAGTGGGAAACACTACAAGGGATAGAAAAGTTTGTGGATCTAGCGATGAGATGTTTAGAAGAATCAGGGGCTGAGAGGCCGACTATGGGTGAGGTGGTGAAAGAGATTGAGAGTATAATGGTGCTTGCCGGTTTGAATCCGAATGCTGATTCAACATCCACGTCAGCAAATTATGACGAGGCAAGTAAGGGAAATCCACAGAATCCTTATGGTAATGACGACTTTAGTTACAGCGGGGCCTTCCCGCCTGCAAAAGTAGAACCCCAGTAA 2856 44.26 MDHRIKIFLVLIILVQLSVHVTAQTSTSDSIVLNSLTQGWENTPNSWVGSDPCGSNWDGITCNNSRIISITLSSIGLKGQLSGDIGSLSELTTLDLSYNSEMTGPLPASIGNLAKLYNLILVGCSFSGSIPETIGSLQQLVFLSLNSNRFSGKIPASIGKLPKLYWLDLADNQLDGPIPVSSGTTPGLDLLVTAKHFHFGKNQLSGAIPPKLFNPKMILIHVLFESNQLTGSIPTTIASVKSLEVVRFDRNNLNGPVPSNLSSLTNITELFLSNNKLTGPLPNLNGMNQLSSVDMSNNSFDASDIPSWFSTLSSLTTLKMDNTQLQGQVPTSLFGLSNLQTVVLSRNNLNGSLDLGISISNRLGLIDMRKNKITEVNNKGYSSTLILVDNPVCQESEAVETYCTIPPPKSSYYSTPPNNCLPVSCNSHATSSPKCLCAFPYTGTLVFRAPSFSDLGISSYFVSLEKSLIQSFLSNKLPVDSVALSEPFMDSVNYLDIHLSVFPSGDDQFNQTGISRVGFVLSNQTFKPPSSFGPFYFEADAYQYDTVSTGSSKSSNTVIIGAAVGGSLLVVLLVIAALYAFHQKRQAERATELQNPFAQWDATKSSGPVPQLKGARWFSFEELKKCTNNFGDANDVGSGGYGKVYRGTLPSGQLVAIKRAQKESMQGGLEFKTEIELLSRVHHKNLVSLLGFCFEQGEQMLVYEYVANGNLKDSLTGKSGIRLDWMRRLKIAGGAARGLLYLHELADPPIIHRDVKSNNILLDGHLNAKVSDFGLSKLMVDSERDHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYGFGVVMLELITARRPIERGKYIVREVRMAMDKTKDRYNLQEILDPAIKWETLQGIEKFVDLAMRCLEESGAERPTMGEVVKEIESIMVLAGLNPNADSTSTSANYDEASKGNPQNPYGNDDFSYSGAFPPAKVEPQ 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4317044 4322458 + Conep10aG0087200.1 Cone10ag0847 446645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0847 951 Gene3D Transferase(Phosphotransferase) domain 1 706 916 - -
Cone10ag0847 951 FunFam Leucine-rich repeat family protein 28 183 - -
Cone10ag0847 951 Pfam Protein tyrosine and serine/threonine kinase 634 897 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0847 951 FunFam Leucine-rich repeat protein kinase family protein 595 705 - -
Cone10ag0847 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0847 951 Gene3D Ribonuclease Inhibitor 184 284 IPR032675 -
Cone10ag0847 951 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 706 914 - -
Cone10ag0847 951 Gene3D Ribonuclease Inhibitor 285 407 IPR032675 -
Cone10ag0847 951 FunFam Leucine-rich repeat protein kinase family protein 184 283 - -
Cone10ag0847 951 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524(InterPro)
Cone10ag0847 951 SUPERFAMILY L domain-like 33 355 - -
Cone10ag0847 951 Gene3D Ribonuclease Inhibitor 28 183 IPR032675 -
Cone10ag0847 951 SMART serkin_6 630 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0847 951 CDD STKc_IRAK 636 901 - -
Cone10ag0847 951 MobiDBLite consensus disorder prediction 912 936 - -
Cone10ag0847 951 MobiDBLite consensus disorder prediction 912 951 - -
Cone10ag0847 951 PANTHER RECEPTOR-LIKE PROTEIN 55 40 899 - -
Cone10ag0847 951 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515(InterPro)
Cone10ag0847 951 Pfam Leucine Rich Repeat 140 161 IPR001611 GO:0005515(InterPro)
Cone10ag0847 951 Pfam Leucine Rich Repeat 266 283 IPR001611 GO:0005515(InterPro)
Cone10ag0847 951 SUPERFAMILY Protein kinase-like (PK-like) 616 910 IPR011009 -
Cone10ag0847 951 Gene3D Phosphorylase Kinase; domain 1 601 705 - -
Cone10ag0847 951 ProSiteProfiles Protein kinase domain profile. 630 902 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0847 Cone-Chr10:4317044 Cone3ag0878 Cone-Chr3:4488336 0 dispersed
Cone10ag0847 Cone-Chr10:4317044 Cone19ag1280 Cone-Chr19:8708467 3.54E-59 wgd
Cone10ag0847 Cone-Chr10:4317044 Cone3ag0877 Cone-Chr3:4481877 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81832 PF13041 PPR_2 4.40E-13 CL0020 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0847 - - - 0.0