Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0852 ATGGAAGGGATACCGCATCCGATTCCTCGCACTGTCGAGGAGGTCTTCAGTGACTTTAAAGGCAGACGTACCGGCTTGATCAGAGCCCTATCCACTGACGTTGAAAAGTTCTATCAGCAGTGCGATCCTGACAAAGAAAACTTGTCTCTTTATGGACTGCCAAATGAAACATGGGAAGTCAACTTGCCTGTGGAGGAGGTGCCTCCAGAACTTCCCGAGCCAGCACTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAAGACTGGCTATTGCTGGTTGCTGTTCACAGTGATTCATGGTTGCTTTCGGTAGCTTTCTATTTTGGTGCACGCTTTGGGTTTGGTAAGAATGAAAGGAAGAGGCTTTTCCAGATGATAAACGAGCTTCCAACTATATTTGAAGTTGTGACAGGAAACGTCAAGCACCCAAAAGAGCAATCTGCAACTCATAACAATGGTGGAAAAAGCAAATCAAGTGGGAAGATGTCTAGGCAATCTGAGTCCCAGAGCAAGGGAGTGAAGATTTCTCCCCCACCCAAAGAGGAGGATGATAGTGGAGAAGAGGAAGAAGAAGACGATGAACAGGGCGCCACATGTGGAGCCTGTGGGGACAACTATGGCACCGATGAGTTCTGGATTTGTTGTGATGCATGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACTCCCGCAAAGGCTGAGCATATCAAGCATTACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAGTTTGA 762 46.85 MEGIPHPIPRTVEEVFSDFKGRRTGLIRALSTDVEKFYQQCDPDKENLSLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLLLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINELPTIFEVVTGNVKHPKEQSATHNNGGKSKSSGKMSRQSESQSKGVKISPPPKEEDDSGEEEEEDDEQGATCGACGDNYGTDEFWICCDACERWFHGKCVKITPAKAEHIKHYKCPSCSNKRARV 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4367590 4371044 + Conep10aG0087700.1 Cone10ag0852 446650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0852 253 FunFam PHD finger alfin-like protein 192 248 - -
Cone10ag0852 253 MobiDBLite consensus disorder prediction 142 199 - -
Cone10ag0852 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Cone10ag0852 253 Pfam PHD-finger 200 246 IPR019787 -
Cone10ag0852 253 SMART PHD_3 199 247 IPR001965 -
Cone10ag0852 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Cone10ag0852 253 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone10ag0852 253 MobiDBLite consensus disorder prediction 183 198 - -
Cone10ag0852 253 PANTHER CPG BINDING PROTEIN 9 252 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone10ag0852 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Cone10ag0852 253 CDD PHD_AL_plant 200 249 IPR044104 -
Cone10ag0852 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Cone10ag0852 253 MobiDBLite consensus disorder prediction 143 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0852 Cone-Chr10:4367590 Cone13ag0701 Cone-Chr13:6892579 7.33E-151 dispersed
Cone10ag0852 Cone-Chr10:4367590 Cone3ag0883 Cone-Chr3:4532881 2.05E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44223 PF01650 Peptidase_C13 2.60E-31 CL0093 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0852 K26274 - csv:101212601 421.394