Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone10ag0861 | ATGGATGAGAGGTATTATGATGAAGATAATGGTATAGAAGTAGAGAGATGCGAGAGGGAGGGATCAGGATCGGGATCGGAATCGGAATGTTCAGACATGAAGGAATCGACGGCGCTGAGGCTGAAACAGCCGCTGTTGCTCTCTAACTACAATAGGACCAATAATACCTCTCAGATCGCCATTGTTGGTTCTAATGTTTGCCCCATTGAAAGCCTCGACTACGAGATTATAGAGAATGAGCTTTTCAAGCAAGACTGGAGATCCAGAACAAAGGTTGAGATATGTCAGTATATCTTCCTGAAATGGACGCTTGCACTTCTTATCGGTTTAAGCACAGGGCTCGTCGGCTTCTTCAATAACCTCGCCGTAGAAAACATAGCTGGCTTCAAACTTCTCCTAACAAACAATCTCATGCTTAAGAACAGGTACTATCACGCGTTTGCAGCATATGCCGGATGCAACATGGTCTTAGCCCTTGCAGCTGCAATCCTCTGTGCCTACGTCGCTCCTGCTGCTGCGGGGTCCGGTATTCCCGAGGTCAAAGCATACCTCAATGGTGTAGACTCCTATTCTATACTTGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCGATTTTTGCTGTTGCGGCTGGATTTTCTGTGGGGAAAGAAGGGCCTATGGTGCATACTGGTGCATGCATTGCCTCCATACTTGGCCAGGGTGGCTCACGGAAATATGGTTTGACTTGGAAGTGCCTTAGATATTTCAAAAACGACCGAGACAGGAGGGATTTGATCACCTGTGGTGCAGCTGCTGGTGTAGCCGCTGCCTTCAGGGCCCCAGTCGGTGGCGTCCTTTTCGCCCTTGAAGAAGCTGCTTCATGGTGGAGGAGTGCTCTTCTGTGGAGGACATTCTTTACAACGGCTGTAGTGGCAGTTGTATTGAGAGGTTTCATTGAATTTTGCCGGGGAGGGTCATGTGGACTATTTGGTGAAGGAGGTCTAATCATGTTTGCCGTCAATTCGGAGAACGCCAGTTACAGTATGCCGGATCTAATTGCAGTTATATTCCTCGGAGTTATAGGAGGTGTTTTTGGAAGCCTTTATAATTATCTCGTGGACAAGGTTCTCCGATCTTATAGCATCATAAACGAGAGAGATCCTTTGCTAAAAGTCCTACTTGTCGTGGCCATTTCTTTCTTGACATCTTGTTGCTCATATGGCTTTCCATGGCTTTCAAAATGCATTCCTTGCCCACCTCACTTAGAGGAAGACCAGTGCCCCACTATAGGCCGTTCCGGATACTATAAGAACTTTCAATGCCCACCTAACCACTACAACGACCTCGCCTCTCTGTTTTTCAATACCAATGATGATGCTATACGCAATCTGTTAAGCCCGGGTTCTAGTAAAGATTTCCATATCTCGACCCTTCTGGCTTTCTTTTCTGCTATATACTTTCTAGGCATAGTCACTTACGGCATTGCCGTCCCTTCTGGACTCTTCATCCCCGTCATTCTTGCGGGATCCACTTACGGACGCCTCGTGGGGAAGCTCTTTAGTCCCGTATTGAATCTTGACGTGGGCTTTTTCGCTCTCCTTGGTGCTGCATCATTTCTCGGTGGGACCATGAGAATGACTGTTTCTCTATGTGTAATACTTCTAGAACTTACTAATGATCTTTTGATGCTTCCACTTGTCATGTTAGTCCTTCTCATTTCGAAAACCGTAGCGGATAGTTTCAACCATGGTGTTTACGACCAAATCGTGAAAATGAAAGGCTTACCTTACATGGAAGCCCATGCAGAACCATACATGAGACACTTAGTTGCTAGCGATGTTGTTTCGGGTCCGTTAATTACATTCTCTGGTATTGAAAAGGTTGGAACTATATTGCATGCTTTGAAGCTGACAGGGCATAACGGGTTTCCTGTAATTGATGAGCCACCTTTTTCTGATGCTCCTGAGCTGTGTGGCCTTGTTTTGAGGTCTCATTTGCTTGTTTTGCTTAAAGGGAAGAAGTTTACGAAGCAGAGGATGAGAACTGGGTCTGAGATTATGAAGAGGTTTAAGGCGCATGATTTTGCCAAAGCGGGTTCGGGAAAAGGGGTGAAGCTTGAGGATTTGGATATTAAGGAAGAGGAGATGGAGATGTATGTTGATCTTCATCCTATTACAAACACTTCATCGTATACTGTGGTTGAGACCGTGTCTTTGGCTAAGGCTGCTGTTCTGTTTCGGCAACTTGGTCTGAGGCACATGTCAGTGGTTCCCAAGACACCTGGAAGGTCTCCGATTGTTGGGATTCTTACGCGGCACGACTTCATGCCAGAGCATGTACTGAGACTTTACCCGCACTTCAAGCCGCACAATTGCTGCATTTCTACCCGGTTGAACATCTGCAAGAATAGCGTCCAGGGAGTCCTCTGA | 2412 | 46.23 | MDERYYDEDNGIEVERCEREGSGSGSESECSDMKESTALRLKQPLLLSNYNRTNNTSQIAIVGSNVCPIESLDYEIIENELFKQDWRSRTKVEICQYIFLKWTLALLIGLSTGLVGFFNNLAVENIAGFKLLLTNNLMLKNRYYHAFAAYAGCNMVLALAAAILCAYVAPAAAGSGIPEVKAYLNGVDSYSILAPSTLFVKIFGSIFAVAAGFSVGKEGPMVHTGACIASILGQGGSRKYGLTWKCLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIEFCRGGSCGLFGEGGLIMFAVNSENASYSMPDLIAVIFLGVIGGVFGSLYNYLVDKVLRSYSIINERDPLLKVLLVVAISFLTSCCSYGFPWLSKCIPCPPHLEEDQCPTIGRSGYYKNFQCPPNHYNDLASLFFNTNDDAIRNLLSPGSSKDFHISTLLAFFSAIYFLGIVTYGIAVPSGLFIPVILAGSTYGRLVGKLFSPVLNLDVGFFALLGAASFLGGTMRMTVSLCVILLELTNDLLMLPLVMLVLLISKTVADSFNHGVYDQIVKMKGLPYMEAHAEPYMRHLVASDVVSGPLITFSGIEKVGTILHALKLTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKKFTKQRMRTGSEIMKRFKAHDFAKAGSGKGVKLEDLDIKEEEMEMYVDLHPITNTSSYTVVETVSLAKAAVLFRQLGLRHMSVVPKTPGRSPIVGILTRHDFMPEHVLRLYPHFKPHNCCISTRLNICKNSVQGVL | 803 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 4442587 | 4445946 | - | Conep10aG0088600.1 | Cone10ag0861 | 446659 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone10ag0861 | 803 | Pfam | Voltage gated chloride channel | 158 | 573 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0861 | 803 | CDD | ClC_6_like | 70 | 592 | - | - | |
| Cone10ag0861 | 803 | PRINTS | Plant CLC chloride channel signature | 286 | 294 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Plant CLC chloride channel signature | 75 | 83 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Plant CLC chloride channel signature | 300 | 310 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Plant CLC chloride channel signature | 318 | 325 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Plant CLC chloride channel signature | 443 | 459 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cone10ag0861 | 803 | SUPERFAMILY | Clc chloride channel | 79 | 594 | IPR014743 | - | |
| Cone10ag0861 | 803 | Gene3D | Clc chloride channel | 93 | 592 | - | - | |
| Cone10ag0861 | 803 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 49 | 773 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cone10ag0861 | 803 | FunFam | Chloride channel ClC3 | 93 | 407 | - | - | |
| Cone10ag0861 | 803 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Cone10ag0861 | 803 | Gene3D | - | 593 | 776 | IPR046342 | - | |
| Cone10ag0861 | 803 | PRINTS | Chloride channel signature | 541 | 560 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Chloride channel signature | 265 | 284 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Chloride channel signature | 201 | 220 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Chloride channel signature | 170 | 187 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Chloride channel signature | 579 | 593 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Chloride channel signature | 523 | 539 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0861 | 803 | PRINTS | Chloride channel signature | 491 | 511 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone10ag0861 | 803 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cone10ag0861 | 803 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 605 | 772 | - | - | |
| Cone10ag0861 | 803 | SUPERFAMILY | CBS-domain pair | 596 | 770 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone10ag0861 | Cone-Chr10:4442587 | Cone12ag0789 | Cone-Chr12:7236184 | 0 | dispersed | |
| Cone10ag0861 | Cone-Chr10:4442587 | Cone3ag0892 | Cone-Chr3:4599137 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone10ag0861 | K05016 | - | rcu:8262590 | 1160.98 |