Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0890 ATGGAGAATCATCAGTTCCATCACAATCTTTTCGAAAGGCGCCCTATTTTCAAATCCAGGGCTCCTGCTGTTAAATGGGTCAAAGAATGGGTTCCTCAAGATGTAGTAGCAACAGGAGGAAAGTGCCTTCTCTTCAGATGGGTCACTGAGGACACGGTGAAGGCACTGAAAGAGAAGGCAAAAGAGTCAGAGGTACCGGAACTGGAACCGGAACCAACTACAGAAGTACTTTTCCTTTGCAGCTACGAAGGCTGTGGAAAGACCTTCATTGATGCTGGTGCTTTGAGGAAGCATTCTCATATCCATGGAGAAAGACAATATGTTTGTCATTATGAAGGATGTGGAAAGAAATTTTTGGATAGTTCAAAGCTGAAAAGACACTTTCTTATTCACACAGGGAAACGAGATTTTGTTTGTCCTCATGAAGGTTGTGGTAAGGCATTCTCACTGGATTTCAACTTGAGATCGCACATGAAAACGCATTCGCAAGAAAATTACCATATCTGCCCTTACCAAGATTGCGGAAAGAGATTTGCTCACGAGTATAAGCTTAAGAACCATGTCTCATCTCACCATGAAAAGAATGCGAATGCTGAGGTGGTGAAGTACACGCCTCCACCCGAGAAGCAAATGAAAGTTTCCAAACCTCAAACTGCAGTTTATGGCTTGGCATCATCAGACCGCCCTTATGCTTGTCCTTATGTAGGGTGTGAAAAGGCATATATCCATGAATACAAGCTCAAACTCCATCTTAGGAGAGAACATCCGGACCATATGTCGGACGAAAATGCCCCCATCCATTTAGATAATGAAATGGACGTAGGTAGTGACCAAGATGCGTATGGGGGTAAACGGGTAAATGGGAAAGTGCAGAAACAGAATAACAAGTCCAAACCCAACATAAGGTTGCCGCCTTCTAAAGTACGGAGGAAAGGGTCAATGGAAACCCCTTCTCCAGCCCCACCTGTGAGTGCGGTGAAAAGGGCATGGCCCGAGAAAGAAGAGGTGGTTGTTTACAGGGGTGAAGAGGAAGATAGTGAAGAAACAGAGGATGAGGAGCATGATAATATTGAGGAGGGTTGGAGATATGCGGAAAATGAAGAAGATGATGAAGAAACCGAGTATGAAGATTGA 1134 44.27 MENHQFHHNLFERRPIFKSRAPAVKWVKEWVPQDVVATGGKCLLFRWVTEDTVKALKEKAKESEVPELEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGKRDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYQDCGKRFAHEYKLKNHVSSHHEKNANAEVVKYTPPPEKQMKVSKPQTAVYGLASSDRPYACPYVGCEKAYIHEYKLKLHLRREHPDHMSDENAPIHLDNEMDVGSDQDAYGGKRVNGKVQKQNNKSKPNIRLPPSKVRRKGSMETPSPAPPVSAVKRAWPEKEEVVVYRGEEEDSEETEDEEHDNIEEGWRYAENEEDDEETEYED 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4602079 4604337 + Conep10aG0091500.1 Cone10ag0890 446688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0890 377 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Cone10ag0890 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
Cone10ag0890 377 SMART c2h2final6 137 161 IPR013087 -
Cone10ag0890 377 SMART c2h2final6 230 255 IPR013087 -
Cone10ag0890 377 SMART c2h2final6 167 191 IPR013087 -
Cone10ag0890 377 SMART c2h2final6 78 102 IPR013087 -
Cone10ag0890 377 SMART c2h2final6 107 131 IPR013087 -
Cone10ag0890 377 MobiDBLite consensus disorder prediction 341 355 - -
Cone10ag0890 377 SUPERFAMILY beta-beta-alpha zinc fingers 225 253 IPR036236 -
Cone10ag0890 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 166 IPR013087 -
Cone10ag0890 377 ProSitePatterns Zinc finger C2H2 type domain signature. 80 102 IPR013087 -
Cone10ag0890 377 MobiDBLite consensus disorder prediction 362 377 - -
Cone10ag0890 377 Gene3D Classic Zinc Finger 104 134 - -
Cone10ag0890 377 Gene3D Classic Zinc Finger 164 197 - -
Cone10ag0890 377 FunFam Zinc finger transcription factor YY1 205 273 - -
Cone10ag0890 377 ProSitePatterns Zinc finger C2H2 type domain signature. 139 161 IPR013087 -
Cone10ag0890 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 136 IPR013087 -
Cone10ag0890 377 FunFam zinc finger transcription factor YY1 78 103 - -
Cone10ag0890 377 SUPERFAMILY beta-beta-alpha zinc fingers 161 194 IPR036236 -
Cone10ag0890 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 107 IPR013087 -
Cone10ag0890 377 FunFam Putative zinc finger protein 143 104 134 - -
Cone10ag0890 377 Pfam Zinc finger, C2H2 type 137 161 IPR013087 -
Cone10ag0890 377 Pfam Zinc finger, C2H2 type 80 102 IPR013087 -
Cone10ag0890 377 Pfam Zinc finger, C2H2 type 167 191 IPR013087 -
Cone10ag0890 377 FunFam zinc finger transcription factor YY1 164 195 - -
Cone10ag0890 377 Gene3D Classic Zinc Finger 207 267 - -
Cone10ag0890 377 SUPERFAMILY beta-beta-alpha zinc fingers 118 170 IPR036236 -
Cone10ag0890 377 ProSitePatterns Zinc finger C2H2 type domain signature. 169 192 IPR013087 -
Cone10ag0890 377 MobiDBLite consensus disorder prediction 258 274 - -
Cone10ag0890 377 SUPERFAMILY beta-beta-alpha zinc fingers 81 131 IPR036236 -
Cone10ag0890 377 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 67 330 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Cone10ag0890 377 FunFam Zinc finger protein 410 135 162 - -
Cone10ag0890 377 Gene3D Classic Zinc Finger 135 162 - -
Cone10ag0890 377 Gene3D Classic Zinc Finger 78 103 - -
Cone10ag0890 377 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 196 IPR013087 -
Cone10ag0890 377 MobiDBLite consensus disorder prediction 258 377 - -
Cone10ag0890 377 ProSitePatterns Zinc finger C2H2 type domain signature. 109 131 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0890 Cone-Chr10:4602079 Cone10ag0891 Cone-Chr10:4614471 3.33E-193 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44225 PF01841 Transglut_core 3.70E-11 CL0125 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0890 - - - 0.0