Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0891 ATGGAGAATCATCAATTCCATCACAATCTTTTCGAAAGGCGCCCTATTTTCAAATCCAGAGCTCCTGCTGTTAAATGGGTCAAAGAATGGGTTCCTCAAGATGTAGTAGCAACAGGAGGAAAGTGCCTTCTCTTCAGATGGGTCACTGAGGACACGGTGAAGGCACTGAAAGAGAAGGCAAAAGAGTCAGAGGTACCGGAACTGGAACCAGAACCAACTACCGAAGTACTTTTCCTTTGCAGCTACGAAGGCTGTGGAAAGACCTTCATTGATGCTGGTGCTTTGAGGAAGCATTCTCATATCCATGGAGAAAGACAATATGTTTGTCATTATGAAGGATGTGGAAAGAAATTTTTGGATAGTTCAAAGCTGAAAAGACACTTTCTTATTCACACAGGGAAACGAGATTTTGTTTGTCCTCATGAAGGTTGTGGTAAGGCATTCTCACTGGATTTCAACTTGAGATCGCACATGAAAACGCATTCGCAAGAAAATTACCATATCTGCCCTTACCAAGATTGCGGAAAGAGATTTGCTCACGAGTATAAGCTTAAGAACCATGTCTCATCTCACCATGAAAAGAATGCGAATGCGAATGCTGAGGTGGTGAAGTACACGCCTCCACCCGAGAAGCAAATGAAAGTTTCCAAACCTCAAACTGCAGTTTATGGCTCGGCATCATCAGACCGCCCTTATGCTTGTCCTTATGTAGGGTGTGAAAAGGCATATATCCATGAATACAAGCTCAAACTCCATCTTAGGAGAGAACATCCGGACCATATGTCGGACGAAAATGCCCCCATCCATTTAGATAATGAAATGGACGTAGGTAGTGACCAAGATGCGTATGGGGGTAAACGGGCAAATGGGAAAGTGCAGAAACAGAATAACAAGTCCAAACCCAACATAAAGTTGCCGCCTTCTAAAGTACGGAGGAAAGGGTCAATGGGAACCCCTTCTCCGGCCCCACCTCTGAGTGCGGTGAAAAAGGCATGGCCCAAGAAAGAAGAGGTGGTTGTTTATAGGGGTGAAGAGGAAGATAGTGAAGAAACAGAGGATGAGGAGCATGATAATGTTGAGGAGGGTTGGAGGTACGCGGAAAATGAAGAAGATGATGAAGAAACTGAGTATGAAGATTGA 1140 44.3 MENHQFHHNLFERRPIFKSRAPAVKWVKEWVPQDVVATGGKCLLFRWVTEDTVKALKEKAKESEVPELEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGKRDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYQDCGKRFAHEYKLKNHVSSHHEKNANANAEVVKYTPPPEKQMKVSKPQTAVYGSASSDRPYACPYVGCEKAYIHEYKLKLHLRREHPDHMSDENAPIHLDNEMDVGSDQDAYGGKRANGKVQKQNNKSKPNIKLPPSKVRRKGSMGTPSPAPPLSAVKKAWPKKEEVVVYRGEEEDSEETEDEEHDNVEEGWRYAENEEDDEETEYED 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4614471 4616945 + Conep10aG0091600.1 Cone10ag0891 446689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0891 379 MobiDBLite consensus disorder prediction 260 276 - -
Cone10ag0891 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 166 IPR013087 -
Cone10ag0891 379 SUPERFAMILY beta-beta-alpha zinc fingers 118 170 IPR036236 -
Cone10ag0891 379 SMART c2h2final6 137 161 IPR013087 -
Cone10ag0891 379 SMART c2h2final6 232 257 IPR013087 -
Cone10ag0891 379 SMART c2h2final6 167 191 IPR013087 -
Cone10ag0891 379 SMART c2h2final6 78 102 IPR013087 -
Cone10ag0891 379 SMART c2h2final6 107 131 IPR013087 -
Cone10ag0891 379 MobiDBLite consensus disorder prediction 260 379 - -
Cone10ag0891 379 ProSitePatterns Zinc finger C2H2 type domain signature. 80 102 IPR013087 -
Cone10ag0891 379 MobiDBLite consensus disorder prediction 343 357 - -
Cone10ag0891 379 ProSitePatterns Zinc finger C2H2 type domain signature. 139 161 IPR013087 -
Cone10ag0891 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 136 IPR013087 -
Cone10ag0891 379 FunFam zinc finger transcription factor YY1 78 103 - -
Cone10ag0891 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 107 IPR013087 -
Cone10ag0891 379 MobiDBLite consensus disorder prediction 364 379 - -
Cone10ag0891 379 Gene3D Classic Zinc Finger 164 197 - -
Cone10ag0891 379 Gene3D Classic Zinc Finger 104 134 - -
Cone10ag0891 379 FunFam Putative zinc finger protein 143 104 134 - -
Cone10ag0891 379 FunFam Zinc finger transcription factor YY1 207 275 - -
Cone10ag0891 379 SUPERFAMILY beta-beta-alpha zinc fingers 227 255 IPR036236 -
Cone10ag0891 379 SUPERFAMILY beta-beta-alpha zinc fingers 81 131 IPR036236 -
Cone10ag0891 379 ProSitePatterns Zinc finger C2H2 type domain signature. 234 257 IPR013087 -
Cone10ag0891 379 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 67 367 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Cone10ag0891 379 ProSitePatterns Zinc finger C2H2 type domain signature. 169 192 IPR013087 -
Cone10ag0891 379 Gene3D Classic Zinc Finger 208 269 - -
Cone10ag0891 379 Gene3D Classic Zinc Finger 135 162 - -
Cone10ag0891 379 Gene3D Classic Zinc Finger 78 103 - -
Cone10ag0891 379 Pfam Zinc finger, C2H2 type 80 102 IPR013087 -
Cone10ag0891 379 Pfam Zinc finger, C2H2 type 137 161 IPR013087 -
Cone10ag0891 379 Pfam Zinc finger, C2H2 type 167 191 IPR013087 -
Cone10ag0891 379 FunFam zinc finger transcription factor YY1 164 195 - -
Cone10ag0891 379 FunFam Zinc finger protein 410 135 162 - -
Cone10ag0891 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 196 IPR013087 -
Cone10ag0891 379 ProSitePatterns Zinc finger C2H2 type domain signature. 109 131 IPR013087 -
Cone10ag0891 379 SUPERFAMILY beta-beta-alpha zinc fingers 161 194 IPR036236 -
Cone10ag0891 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 262 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0890 Cone-Chr10:4602079 Cone10ag0891 Cone-Chr10:4614471 3.33E-193 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44226 PF01841 Transglut_core 4.10E-11 CL0125 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0891 - - - 0.0