Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0893 ATGGGAAAAGGACTCTCTTTTCACCGGAGCAGCAGTCGGCGGTCGAAGACGACGACAGAGAAACCAGCTTTGACTGGCGACGGTTCTCCGTTTAATGCTAATAACAATGATATATTGATTGGTGTTGGAGGTGGGACGGTAGCGAAGGTGAAGAAGAAGGCTGGAGGAGCGAGATTATGGATGCGATTCGAGTGTTCGGGAAGATCGGAGGTTGTGGAGTGCGACAAGAGCGATATTATCCGGCGAGCAGCAATTCCAGCTAGGGATTTGAGGATACTTGGTCCTGTTTTCTCTCATTCGTCCAATATCCTTGCAAGAGAAAAGGCCATGGTTGTTAATTTGGAGTTTATAAAGGCTATAGTTACTGCTGAAGAAGTGCTTATACTCGAACCACTCCGGCAGGAGGTTCTTCCATTTGTCGATCAGCTAAGGCAACAAATACCTCAGAAAAATTCATCCGGAAACAATGGAGCAGGGACTCTAGACGACCAAGAAAATAGCATGCATGATCTACCATTTGAATTTCAGGTCCTGGAGATTGCTTTAGAGGTTGTTTGTATGTGCTTAGACTCCAACGTGGCTGACCTTGAGAAGAATGCTTACCCTGTGCTGGATGAACTGGCTCGGAATGTTAGCACCAAGAATCTTGAACGTGTTAGGAGTTTGAAGAGCATGCTTACCCGCCTGCTTGCTCGGGTGCAAAAGGTGAGAGATGAAATCGAACATCTATTGGATGATAATGAAGATATGGCACACTTATATTTGACGAGGAAGTTGATGCTAAATCAGCAACATGACGCCTTGTCCAGCACCATCCCCACTTCCACCCTTCGTCGACTTGGCTCTAACCGGAGCGGTAGTATGGTGACTAGCAACCTTATGGAGGATAATGATGTGGAGGACTTGGAAATGTTGCTCGAGGCTTATTTTATGCAATTGGATGGGACCCGTAACAAGATATTATCTGTTCGAGAATACATCGATGATACAGAGGATTATGTCAACATTCAACTCGACAACCAGAGAAATGAACTTATTCAACTTCAATTGACATTAACCATTGCTTCGTTTGCTATAGCGCTTGAAACTCTGATTGCAGGGGCATTTGGAATGAACATCCCTTGTAAATTGTACAATGTAAATGGGATCTTTGAGATATTCGTCGGAAGTACTTCTGCCGGTTGTGTGCTAATCTTCCTGCTTGTTTTAGGATATGCAAGATGGAAGAAGTTGCTTGGTTCTTAA 1245 44.42 MGKGLSFHRSSSRRSKTTTEKPALTGDGSPFNANNNDILIGVGGGTVAKVKKKAGGARLWMRFECSGRSEVVECDKSDIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLILEPLRQEVLPFVDQLRQQIPQKNSSGNNGAGTLDDQENSMHDLPFEFQVLEIALEVVCMCLDSNVADLEKNAYPVLDELARNVSTKNLERVRSLKSMLTRLLARVQKVRDEIEHLLDDNEDMAHLYLTRKLMLNQQHDALSSTIPTSTLRRLGSNRSGSMVTSNLMEDNDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIALETLIAGAFGMNIPCKLYNVNGIFEIFVGSTSAGCVLIFLLVLGYARWKKLLGS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4625335 4627927 - Conep10aG0091800.1 Cone10ag0893 446691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0893 414 FunFam Magnesium transporter MRS2-1 48 131 - -
Cone10ag0893 414 Gene3D - 46 131 - -
Cone10ag0893 414 FunFam Magnesium transporter MRS2-5 149 345 - -
Cone10ag0893 414 Pfam Magnesium transporter MRS2-like 290 342 - -
Cone10ag0893 414 Pfam Magnesium transporter MRS2-like 72 266 - -
Cone10ag0893 414 Gene3D Magnesium transport protein CorA, transmembrane region 132 345 - -
Cone10ag0893 414 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 46 411 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cone10ag0893 414 CDD Mrs2_Mfm1p-like 60 411 IPR039204 -
Cone10ag0893 414 MobiDBLite consensus disorder prediction 1 30 - -
Cone10ag0893 414 Coils Coil 219 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0893 K16075 - - cit:102630717 576.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0893 Cone-Chr10:4625335 Cone15ag0138 Cone-Chr15:647124 9.12E-108 dispersed
Cone10ag0893 Cone-Chr10:4625335 Cone3ag0920 Cone-Chr3:4724747 2.87E-270 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag0276 . 1 444 MRS2 Gene Family AT1G16010 81.3 1.8e-197 686.0
Cone11ag0946 . 1 441 MRS2 Gene Family AT1G16010 80.5 1.6e-193 672.9
Cone20ag1134 . 1 353 MRS2 Gene Family AT1G16010 81.9 4.4e-156 548.5
Cone9ag0537 . 14 423 MRS2 Gene Family AT1G16010 52.1 4.3e-111 399.1
Cone7ag1020 . 16 376 MRS2 Gene Family AT1G16010 50.3 6.1e-89 325.5
Cone15ag0138 . 1 369 MRS2 Gene Family AT5G64560 79.9 3.1e-158 555.4
Cone7ag1020 . 10 362 MRS2 Gene Family AT5G64560 69.3 5.7e-128 454.9
Cone14ag0131 . 32 307 MRS2 Gene Family AT5G64560 82.6 9.7e-120 427.6
Cone17ag0276 . 51 402 MRS2 Gene Family AT5G64560 50.9 2.5e-83 306.6
Cone7ag0295 . 3 169 MRS2 Gene Family AT5G64560 60.1 2.1e-37 154.1
Cone4ag0291 . 2 157 MRS2 Gene Family AT5G64560 57.9 6.0e-37 152.5
Cone3ag1040 . 40 472 MRS2 Gene Family AT3G19640 62.4 2.7e-138 489.6
Cone10ag0893 . 1 414 MRS2 Gene Family AT3G58970 66.8 3.6e-142 502.3
Cone3ag0920 . 1 414 MRS2 Gene Family AT3G58970 66.4 1.0e-141 500.7
Cone9ag0537 . 11 423 MRS2 Gene Family AT2G03620 66.0 2.3e-138 489.6
Cone17ag0276 . 13 444 MRS2 Gene Family AT2G03620 54.2 4.4e-113 405.6
Cone11ag0946 . 13 441 MRS2 Gene Family AT2G03620 54.0 2.2e-112 403.3
Cone20ag1134 . 13 353 MRS2 Gene Family AT2G03620 52.9 3.1e-82 303.1
Cone10ag0893 . 42 413 MRS2 Gene Family AT4G28580 51.7 1.2e-91 334.3
Cone3ag0920 . 42 413 MRS2 Gene Family AT4G28580 51.2 6.0e-91 332.0
Cone15ag0138 . 1 331 MRS2 Gene Family AT5G09690 72.1 1.0e-122 437.2
Cone7ag1020 . 5 324 MRS2 Gene Family AT5G09690 62.8 6.6e-101 364.8
Cone14ag0131 . 32 269 MRS2 Gene Family AT5G09690 72.0 7.3e-84 308.1
Cone17ag0276 . 43 380 MRS2 Gene Family AT5G09690 51.0 3.9e-77 285.8
Cone10ag0893 . 39 350 MRS2 Gene Family AT5G09690 50.2 6.8e-74 275.0
Cone3ag0920 . 39 350 MRS2 Gene Family AT5G09690 50.2 1.3e-72 270.8
Cone4ag1110 . 5 217 MRS2 Gene Family AT5G09690 58.1 9.0e-58 221.5
Cone15ag0138 . 23 291 MRS2 Gene Family AT5G09720 65.4 3.4e-88 322.4
Cone7ag1020 . 13 295 MRS2 Gene Family AT5G09720 54.7 4.5e-72 268.9
Cone14ag0131 . 32 229 MRS2 Gene Family AT5G09720 60.7 7.7e-56 214.9
Cone4ag1110 . 1 223 MRS2 Gene Family AT5G09720 52.6 2.6e-51 199.9
Cone17ag0276 . 1 444 MRS2 Gene Family AT1G80900 78.7 1.8e-189 659.4
Cone11ag0946 . 1 441 MRS2 Gene Family AT1G80900 79.5 4.0e-189 658.3
Cone20ag1134 . 1 353 MRS2 Gene Family AT1G80900 79.4 3.6e-150 528.9
Cone9ag0537 . 35 423 MRS2 Gene Family AT1G80900 52.0 1.8e-104 377.1
Cone11ag1343 . 10 454 MRS2 Gene Family AT5G22830 67.3 1.0e-155 547.4
Cone18ag0237 . 33 445 MRS2 Gene Family AT5G22830 68.8 1.7e-150 530.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47