Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0903 ATGAAGATGTGGTCGGGAGCCCGGAAGAGCCACCATGATGGAAAGGCGGGTGGAGGAAAGTCATCGGAAGGTGATCATGTGGTAGTAGATGGAGATCATGAGAATATTGAAATGTTACCATCATCTAGTTCTTTGAACTTGAGGAATCTTTCAAAGCTTATTCTTCCTCCATTGGGTGCTTCAAGCAACTTCAACCAGAATCATCTAAGCTCGAAAAAATGGGTCATATTACCCATGGATTCAAGATACAGATACTGGGAGAGTTTGATGGTGGTTTTGGTACTTTATTCGGCATGGGCTTACCCGTTTGAGGTGGCTTTTCTGAATACATCTCCAAAAAATAGAGTTTACGACATTGCAGACAACACAGTCGACCTTTTCTTCGGCATCGACATTGTCTTGACTTTCTTCCTTGCCTACATTGATCCTACGACTCATCTACTTGTCTTTCACCGTAAAAAGATCGCTATCCGGTACTTATCAACATGGTTTGTGATGGATTTGGCATCAACAATCCCATTTGAGGCAATAGCATACCTGATCACACGCAAACATAAGTTGAGTCTAGCTTGTACTCTCTTGGGTTTGCTCAGATTTTGGAGGCTAAGGCGAGTCAAGCAATTTTTCACCAGGCTTGAGAAGGATATTAGATTCAGCTACTTTTGGGTTCGGTGCGCCCGGCTTTTATCTGTAACATTATTTTTGGTGCACTGTGCTGGATGTCTTTACTACATGTTAGCTGATAGATATCCTGTAAAGGGAAACACTTGGCTTGGAGCAATGAATCCAAATTTCCGGGAGACGAGCTTGAAGATCAGATATATTGCAGCCTTATATTGGTCAGTCACGACAATGACAACTGTTGGATATGGTGATCTTCATGCCGTTAACACTGAGGAAATGGTCTTCATCATATTCTACATGCTCTTTAACCTTGGCCTTACTGCTTACTTGATTGGAAACATGACTAACTTGGTCGTTGAAGGGACCCGCCGTACTATGGAGTTTAGAAATAGCATCGAGGCAGCATCAAATTTTGTGAACAGAAACAGGCTACCTCCAAAGATGAAGGAACATATATTGGCATACATGTGCTTGAGGTTTAAAGCTGAGAGTTTGAACCAACACCATCTAATCGAACAGCTACCCAAATCCATTTGTAAGAGTATATGCCAACATTTGTTTTTGCCTACTGTTGAGAAGGTCTACCTCTTCAAGGGTGTCTCAAGGGAGATGCTTTTACTCTTGGTCACAAAGATGAACGCCGAATATATACCACCAAAAGAGGATGTGATCATGCAAAATGAAGCCCCGGAAGATGTATACATAATAGTGTCCGGAGAAGTGGAGATTATAGAGTGTGAAATAGAGAAAGAGAGAATTGTGGGAAGTTTACAAAGTGGGGACATGTTCGGAGAGATTGGAGCACTTTGTTCCGGCCACCATAGCTTTACTTATAGAACCAAGACCCTTTCACAGCTCTTGAGCCTCAAAACAAGTGATCTACTTCAAGTTCTACAAACCAAGCAACAAGATCAGGTTTCTATTGTTGCAAACTTCCTCAAGGGAAAAGAACTGGGGCACAAAATAACAATAGATGATACAATTACCAAAAACGAGGAGAAGAATTGGGGATTTAGATCACCCATGGGGCCAAATTATAATACTAATATTCCAAGGGTGAGTATTTACAAAGGCCATCCCATACTAAAAAAACAGGCTTGTTCGGCTCAAGCTGCAGGAAGGCTAATTAGGCTGCCAAATTCTATAGAAGAGCTAAAAAATATAGCAGGCCAAAAGCTCGGCATTGATGTAAGAAATGCTATGGTGATGGATGAAGGAGGAACAGAAATAGACGCCATTGAAGTGATTAGAGATAATGATAAACTTTTCATAGTTGAAAACTCCCAACTGAATATTGTAATATGA 1929 41.16 MKMWSGARKSHHDGKAGGGKSSEGDHVVVDGDHENIEMLPSSSSLNLRNLSKLILPPLGASSNFNQNHLSSKKWVILPMDSRYRYWESLMVVLVLYSAWAYPFEVAFLNTSPKNRVYDIADNTVDLFFGIDIVLTFFLAYIDPTTHLLVFHRKKIAIRYLSTWFVMDLASTIPFEAIAYLITRKHKLSLACTLLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFLVHCAGCLYYMLADRYPVKGNTWLGAMNPNFRETSLKIRYIAALYWSVTTMTTVGYGDLHAVNTEEMVFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVNRNRLPPKMKEHILAYMCLRFKAESLNQHHLIEQLPKSICKSICQHLFLPTVEKVYLFKGVSREMLLLLVTKMNAEYIPPKEDVIMQNEAPEDVYIIVSGEVEIIECEIEKERIVGSLQSGDMFGEIGALCSGHHSFTYRTKTLSQLLSLKTSDLLQVLQTKQQDQVSIVANFLKGKELGHKITIDDTITKNEEKNWGFRSPMGPNYNTNIPRVSIYKGHPILKKQACSAQAAGRLIRLPNSIEELKNIAGQKLGIDVRNAMVMDEGGTEIDAIEVIRDNDKLFIVENSQLNIVI 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4677144 4680897 - Conep10aG0092800.1 Cone10ag0903 446701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0903 642 Pfam KHA, dimerisation domain of potassium ion channel 560 632 IPR021789 -
Cone10ag0903 642 PRINTS EAG/ELK/ERG potassium channel family signature 132 141 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone10ag0903 642 PRINTS EAG/ELK/ERG potassium channel family signature 121 131 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone10ag0903 642 PRINTS EAG/ELK/ERG potassium channel family signature 318 327 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone10ag0903 642 PRINTS EAG/ELK/ERG potassium channel family signature 300 311 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone10ag0903 642 PRINTS EAG/ELK/ERG potassium channel family signature 274 291 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone10ag0903 642 Pfam Cyclic nucleotide-binding domain 424 508 IPR000595 -
Cone10ag0903 642 ProSiteProfiles cAMP/cGMP binding motif profile. 404 523 IPR000595 -
Cone10ag0903 642 FunFam Potassium channel KAT2 392 526 - -
Cone10ag0903 642 Pfam Ion transport protein 83 333 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone10ag0903 642 FunFam Potassium channel KAT3 85 328 - -
Cone10ag0903 642 ProSiteProfiles KHA domain profile. 560 642 IPR021789 -
Cone10ag0903 642 PANTHER POTASSIUM CHANNEL AKT1 40 530 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cone10ag0903 642 Gene3D Jelly Rolls 371 544 IPR014710 -
Cone10ag0903 642 SUPERFAMILY Voltage-gated potassium channels 78 327 - -
Cone10ag0903 642 SUPERFAMILY cAMP-binding domain-like 331 516 IPR018490 -
Cone10ag0903 642 MobiDBLite consensus disorder prediction 1 27 - -
Cone10ag0903 642 CDD CAP_ED 404 514 IPR000595 -
Cone10ag0903 642 SMART cnmp_10 404 521 IPR000595 -
Cone10ag0903 642 Gene3D - 84 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0903 Cone-Chr10:4677144 Cone6ag0891 Cone-Chr6:4562253 4.33E-166 dispersed
Cone10ag0903 Cone-Chr10:4677144 Cone3ag0931 Cone-Chr3:4806261 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0903 K21867 - csv:101205212 786.563