Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0914 ATGTCTGTGATCTTTGCTTCGTCGGCTTTTTTCTGGCTAATTTTGGTGTTCGGTTTGGTTTCACGAGTCTCTGCTAACCCTGAAGGCGATGCATTGTTTGAGTTTAAATCAAAGTTATCGGATCCTAATAATGTCCTGCAGAGTTGGGATTCCACACTTGTGAACCCATGCACATGGTTTCACGTCACGTGCAACAATGAGAATAGTGTCACTCGAGTCGATCTTGGAAATGCAAACTTATCCGGTATCTTGGTTCCAAAGCTCGGTCAGTTAGGAAATTTGCAGTACCTGGAACTCTATAGTAACAACATAACTGGAACTATTCCGGATGCACTTGGAAATTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGCCTCGTACCTACGACACTGGGAAAGCTTTCAAAACTGCGTTTCCTGCGTCTCAACAGTAACAGCTTGTCAGGGACTATTCCTTATTCCTTGACTGCCATAATGTCACTGCAAGTCCTGGATCTTTCGAATAATCAGCTAACTGGAGATGTTCCAGTCAATGGTTCTTTTTCGCTGTTTACTCCCATCAGTTTCGCTAATAATCTTCTGAATAATCCTCCACCTGCTCCACCTCCTCCTATTCAGCCATCACCGCCTTCTACATCAGATAATAGTAATACTGGAGCTATTGCCGGAGGAGTTGCTGCTGCTGCTGCTTTGCTGTTTGCTGCCCCTGCAATTGTGCTTGCTCTTTGGCGGCATAAAAGACCAGAAGAACACTTCTTTGACGTACCTGCTGAAGAGGACCCAGAAGTTCATCTTGGCCAGCTCAAAAGGTTTTCTTTACGTGAGCTACAGGTCGCCACAGATTATTTTAGCAACAAAAACATTTTGGGTAGAGGAGGATTTGGAAAGGTTTATAAAGGACGCTTGGCTGATGGCTCTCTAGTGGCAGTAAAAAGACTAAAGGAAGAACGTACTCAAGGTGGGGAGCTACAATTCCAAACGGAGGTAGAGATGATCAGCATGGCCGTGCACCGTAATCTACTTCGTCTCCGTGGATTTTGCATGACACCAACAGAGCGGGTTCTTGTCTATCCCTATATGGCTAATGGAAGTGTAGCTTCATGTCTCAGAGAGCGACCAGATTCACAGCCTCCGCTTACTTGGCCAACACGGCAGAGGATTGCTCTTGGAGCAGCAAGGGGACTTGCTTATTTACACGATCACTGCGATCCTAAAATCATCCACAGGGACGTTAAGGCTGCAAACATACTATTGGATGAAGATTTCGAAGCTGTTGTTGGAGATTTTGGATTGGCTAAACTCATGGACTATAAAGATACTCATGTCACAACTGCAGTTCGCGGCACAATTGGCCATATAGCACCTGAATACCTCTCAACTGGAAAATCTTCTGAAAAAACAGATGTTTTCGGTTATGGGGTAATGCTTCTTGAAATTATAACCGGACAGAGGGCTTTTGATCTTGCTCGGCTTGCAAATGATGATGATGTCATGTTACTCGATTGGGTTAAAGGACTTCTGAAAGATAAGAAGTTAGAAACACTAGTCGATGCCGATCTTGAAGGTAATTACATAGACGAGGAAGTAGAGCAACTCATTCAAGTAGCCCTACTATGCACTCAAGGCTCCCCTATAGAAAGACCCAAAATGTCGGATGTGGTTAGAATGCTTGAAGGAGATGGTCTAGCCGAAAGATGGGAAGAGTGGCAAAAAGAGGAGCGGTTCCACCACGAATTCAACCATAACCACCTTCCCACCACCACTGGCTGGATCTTGGACTCCACCTCACAAATCACTAATGATATATTATCCGGTCCAAGGTGA 1839 44.54 MSVIFASSAFFWLILVFGLVSRVSANPEGDALFEFKSKLSDPNNVLQSWDSTLVNPCTWFHVTCNNENSVTRVDLGNANLSGILVPKLGQLGNLQYLELYSNNITGTIPDALGNLTNLVSLDLYLNNLTGLVPTTLGKLSKLRFLRLNSNSLSGTIPYSLTAIMSLQVLDLSNNQLTGDVPVNGSFSLFTPISFANNLLNNPPPAPPPPIQPSPPSTSDNSNTGAIAGGVAAAAALLFAAPAIVLALWRHKRPEEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDYFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMANGSVASCLRERPDSQPPLTWPTRQRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLEIITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDADLEGNYIDEEVEQLIQVALLCTQGSPIERPKMSDVVRMLEGDGLAERWEEWQKEERFHHEFNHNHLPTTTGWILDSTSQITNDILSGPR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4743650 4749319 - Conep10aG0093900.1 Cone10ag0914 446712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0914 612 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Cone10ag0914 612 ProSiteProfiles Protein kinase domain profile. 288 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0914 612 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Cone10ag0914 612 Gene3D Ribonuclease Inhibitor 25 204 IPR032675 -
Cone10ag0914 612 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Cone10ag0914 612 MobiDBLite consensus disorder prediction 200 224 - -
Cone10ag0914 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 611 - -
Cone10ag0914 612 FunFam Somatic embryogenesis receptor kinase 1 24 209 - -
Cone10ag0914 612 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515(InterPro)
Cone10ag0914 612 FunFam Somatic embryogenesis receptor-like kinase 1 365 582 - -
Cone10ag0914 612 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cone10ag0914 612 CDD STK_BAK1_like 294 565 - -
Cone10ag0914 612 SMART serkin_6 288 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone10ag0914 612 SUPERFAMILY L domain-like 27 204 - -
Cone10ag0914 612 SUPERFAMILY Protein kinase-like (PK-like) 267 563 IPR011009 -
Cone10ag0914 612 Gene3D Transferase(Phosphotransferase) domain 1 365 582 - -
Cone10ag0914 612 Pfam Protein tyrosine and serine/threonine kinase 291 562 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0914 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone10ag0914 612 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Cone10ag0914 612 MobiDBLite consensus disorder prediction 200 215 - -
Cone10ag0914 612 SMART LRR_typ_2 115 138 IPR003591 -
Cone10ag0914 612 SMART LRR_typ_2 91 114 IPR003591 -
Cone10ag0914 612 SMART LRR_typ_2 163 188 IPR003591 -
Cone10ag0914 612 SMART LRR_typ_2 139 162 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0914 Cone-Chr10:4743650 Cone20ag0684 Cone-Chr20:4226198 4.11E-270 dispersed
Cone10ag0914 Cone-Chr10:4743650 Cone3ag0939 Cone-Chr3:4872033 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81838 PF17846 XRN_M 1.50E-115 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0914 K13416 - ath:AT4G33430 965.681