Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0938 ATGGATAATCTATGTTGCTTCAATTTTGTTTACTCTCAGGTTGTTGGAGGGAACTCGTCATGTAGCTCAGGAAAGGGTAGAGGGCATGTGAGCCCTGTCAAGTATGGGTTTAGCTTAGTTAAAGGGAAAGCAAATCATCCCATGGAGGATTATCATGTCGCCAAGTTCATTCAGTTGCAAGGCCGGGAAGTTGGCCTCTTTGCTATATACGACGGTCATCTGGGAGATAGTGTACCTGCTTATCTACAAAAGCACCTCTTCCCTAATATTATAAAGGATGAGGAGTTTTGGACTGATACAAATAGGTCTATCTATAGAGCCTATGAGATGACGGACCAAGCAATCCTCTCGCACAGTCCGGACTTAGGAAGAGGTGGGTCCACTGCAGTTACAGCCATTCTGATCAATGGTCAGAAATTATGGGTAGCAAATGTCGGAGATTCTCGGGCAGTTATTTCAAAGAAAGGGCAGGCAGAGCAGATGACTATAGACCATGAGCCAAATACTGAGCGGGGCAGCATTGAGAACAGGGGTGGATTCGTCTCTAATATGCCAGGTGATGTGGCAAGGGTAAATGGCCAGCTGGCAGTTTCTCGAGCCTTTGGGGACAAGAACCTGAAAACACACTTGCGATCTGATCCCGACATTCAAACTGTTGATATCGGCCCTGATTACGATCTTCTTATTCTAGCAAGTGATGGTCTATGGAAGGTGATGGCAAATCAAGAAGCGGTTGATATAGCGAGAAGGACTAAAGACCCGCAAAGGGCAGCTAAGCAATTAGCAGCTGAGGCTTTGAAGCGGGAAAGTAAGGATGATATCTCAATCATAGTTGTTCGTTTCAAGAGTTGA 852 45.54 MDNLCCFNFVYSQVVGGNSSCSSGKGRGHVSPVKYGFSLVKGKANHPMEDYHVAKFIQLQGREVGLFAIYDGHLGDSVPAYLQKHLFPNIIKDEEFWTDTNRSIYRAYEMTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVISKKGQAEQMTIDHEPNTERGSIENRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQTVDIGPDYDLLILASDGLWKVMANQEAVDIARRTKDPQRAAKQLAAEALKRESKDDISIIVVRFKS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4906845 4909738 + Conep10aG0096300.1 Cone10ag0938 446736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0938 283 CDD PP2Cc 33 281 IPR001932 -
Cone10ag0938 283 SUPERFAMILY PP2C-like 29 282 IPR036457 -
Cone10ag0938 283 FunFam Probable protein phosphatase 2C 39 26 282 - -
Cone10ag0938 283 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Cone10ag0938 283 PANTHER PROTEIN PHOSPHATASE 34 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone10ag0938 283 SMART PP2C_SIG_2 45 281 IPR001932 -
Cone10ag0938 283 SMART PP2C_4 30 279 IPR001932 -
Cone10ag0938 283 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Cone10ag0938 283 Gene3D - 28 283 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0938 Cone-Chr10:4906845 Cone4ag1335 Cone-Chr4:10921634 5.28E-147 dispersed
Cone4ag2028 Cone-Chr4:14086405 Cone10ag0938 Cone-Chr10:4906845 6.23E-06 dispersed
Cone10ag0938 Cone-Chr10:4906845 Cone3ag1093 Cone-Chr3:29567925 1.63E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0938 K17506 - csv:101214223 493.812