Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0979 ATGGCGGCTACACACCTCTTCTGTCATTCTCCTTCCCTCCTCGAACCCCTAAAACAAACCACAAGCCATAACCCATTTCGCCAAATTCCACTTCTGTCCCTCAAACCCACCCAAAAATCCTTATCTCTAAGAGCAGTCCTATCCCAGACCCCCTCCACAACCTTGACCCAAGACGGAGAGAAAAAGACACCGTTTCGTCACTGCTTCACCAAATCCTCAGATGGGTTTCTCTACTGTGAAGGGCTTAAGGTCCATGACGTGATGGAATCCGTCGAGAAAAGACCCTTCTACTTGTACAGTAAGCCTCAGATCACTCGAAATTTCCAAGCTTATAGCGAAGCTTTGCAGGGGCTTAATTCGGTCATAGGTTACGCTATTAAGGCTAATAATAATTTGAAGATTTTGGAGCATTTGCGGCAGTTGGGTTGTGGTGCTGTTCTTGTTAGTGGGAATGAGCTCAGATTAGCTCTCCGCGCCGGTTTCGATCCGACCAAGTGCATTTTTAATGGGAATGGGAAGCTATTGGAGGATTTAGTTCTTGCTGCAGAAAGTGGCGTTTTCATAAATGTTGACAGTGAATTTGACTTGGAAAACATCGTGGCAGCAGCAAGAATTTCTGGAAAGAAGGTTCATGTCTTACTTCGTATCAACCCAGATGTTGACCCTCAGGTTCATCCTTATGTTGCAACGGGGAACAAAAACTCAAAATTTGGCATTAGAAATGAGAAATTGCAATGGTTTTTGGATGAGGTCAAGGCTCATCCTGATGAACTAAAGCTTGTAGGAGCGCATTGCCATCTTGGTTCCACCATTACCAAGGTTGATATATTCAGAGATGCTGCAGTTCTCATGGTCAACTTCATTGATGAAATCCGAGCTCAAGGTTTTGAAATAAATTACTTGAACATTGGAGGTGGACTTGGAATTGATTACCATCATTCTGATGCCGTTCTTCCCACCCCAAGAGACCTAATTGACACTGTCAGAGAGCTGGTCCTTTCTCGAGATTTGAACCTGATCATTGAACCGGGGAGATCTCTGATCGCTAATACATGCTGCTTTGTTAATCGGGTAACTGGCGTCAAGACCAATGGAACCAAAAACTTTATTGTGATTGATGGTAGCATGGCGGAACTTATTCGTCCAAGTCTTTATGGTGCTTATCAACACATTGAGTTGGTTTCTCCTACTTCGTCCAATTCTGAGGTCTCGACTTTTGATGTGGTGGGCCCTGTTTGTGAGTCCGCAGATTTCTTGGGGAAGGACCGGGAGCTCCCTACTCCGGCCAAGGGAACCGGCCTGGTTGTTCATGATGCCGGTGCTTACTGTATGAGCATGGCGTCTACTTACAATCTCAAAATGCGTCCTCCTGAGTACTGGGTTGAAGATGGGTCTGTGGCCAAAATCCGGCATGCCGAGACATTTGAAGACCATTTGCGGTTCTTCGAAAATCTTTGA 1458 45.4 MAATHLFCHSPSLLEPLKQTTSHNPFRQIPLLSLKPTQKSLSLRAVLSQTPSTTLTQDGEKKTPFRHCFTKSSDGFLYCEGLKVHDVMESVEKRPFYLYSKPQITRNFQAYSEALQGLNSVIGYAIKANNNLKILEHLRQLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAESGVFINVDSEFDLENIVAAARISGKKVHVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDEVKAHPDELKLVGAHCHLGSTITKVDIFRDAAVLMVNFIDEIRAQGFEINYLNIGGGLGIDYHHSDAVLPTPRDLIDTVRELVLSRDLNLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYGAYQHIELVSPTSSNSEVSTFDVVGPVCESADFLGKDRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDGSVAKIRHAETFEDHLRFFENL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6587533 6591511 - Conep10aG0100500.1 Cone10ag0979 446777

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0979 485 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 124 142 IPR022653 -
Cone10ag0979 485 CDD PLPDE_III_DapDC 95 461 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cone10ag0979 485 Hamap Diaminopimelate decarboxylase [lysA]. 81 483 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cone10ag0979 485 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 103 349 IPR022644 GO:0003824(InterPro)
Cone10ag0979 485 SUPERFAMILY PLP-binding barrel 94 350 IPR029066 -
Cone10ag0979 485 Gene3D Alanine racemase 101 346 IPR029066 -
Cone10ag0979 485 NCBIfam diaminopimelate decarboxylase 71 479 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cone10ag0979 485 SUPERFAMILY Alanine racemase C-terminal domain-like 324 480 IPR009006 GO:0003824(InterPro)
Cone10ag0979 485 PANTHER DIAMINOPIMELATE DECARBOXYLASE 60 482 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Cone10ag0979 485 FunFam Diaminopimelate decarboxylase 101 346 - -
Cone10ag0979 485 FunFam Diaminopimelate decarboxylase 338 479 - -
Cone10ag0979 485 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 94 479 IPR009006 GO:0003824(InterPro)
Cone10ag0979 485 PRINTS Diaminopimelate decarboxylase signature 367 385 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cone10ag0979 485 PRINTS Diaminopimelate decarboxylase signature 230 239 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cone10ag0979 485 PRINTS Diaminopimelate decarboxylase signature 142 159 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cone10ag0979 485 PRINTS Diaminopimelate decarboxylase signature 450 472 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cone10ag0979 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 440 453 IPR000183 GO:0003824(InterPro)
Cone10ag0979 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 339 358 IPR000183 GO:0003824(InterPro)
Cone10ag0979 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 124 142 IPR000183 GO:0003824(InterPro)
Cone10ag0979 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 144 156 IPR000183 GO:0003824(InterPro)
Cone10ag0979 485 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 257 270 IPR000183 GO:0003824(InterPro)
Cone10ag0979 485 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 293 308 IPR022657 -
Cone10ag0979 485 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 350 440 IPR022643 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0979 K01586 - - vvi:100247076 807.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0979 Cone-Chr10:6587533 Cone3ag1173 Cone-Chr3:30386521 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011287 1 1 1 1 1 0 2 0 1 1 1 1 1 1 1 1 1 2 1 0 1 1 0 0 1 1 1 2 1 2 29