Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0996 ATGCCTGTGAGTTTAGAACCGTTAGATTTAGTAGGCGTACTGATTCCTTACCATTTCAGGTGTCCGATCTCTCTCGAGCTAATGCGCGATCCGGTTACCGTCTCTACCGGTCAAACCTACGACCGCTCAAGCATCGAGTCATGGGTCGCCACCGGCAATACTACGTGCCCGATCACGCGGGTCCCACTCTCCGACTTCGCTCTGATCCCTAATCACACTCTTCGCAGGCTGATACAAGACTGGTGCGTCGCTAACCGTTCTTCCGGCGTCGAACGTATCCCGACGCCCAAACAGCCTGCGGATCCCGGTTCAGTCCGTACTTTATTTGGCCAGGTTTCGTCCCGGTCCAACCCGTTACACTCTCGTCTCTCTGCTCTGCGCCAACTCAGAGGACTCGCTCGTGACTCGGACAAGAATCGTTGTGTCATCTCCTCGCATAATGCGACGGAGATCCTCATCGATATCATCTTCCAGAATTCCGATTCGTCCGAGTTGACTCACGAAGCCCTAGCGGTTCTGGTCATGTTTCAACTCACTGAGTCCGACTGCGAATCTGTCGCATCTGAACCGCACAGAATCGCTTACCTCTCGCATCTGCTTTTCAATTCTTCGATCGACGTGCGAGTCAACTCGGCCGCACTCGTCGAGCTCGTAATAGCCGGAACAAGGTCGCCGGAGCTCCGAGCCGAGATCAGCAGTGTAAATGAGATATTCGAAGGTGTAATCGAAATATTGAGAAATCCAATCTCGTATCCACGTGCGCTGAAGATCGGGATCAAGGCGCTGTTCGCTTTGTGTTCGGTGAAGCAGACGAGGCATAACGCGGTTTCAGCCGGAGCAGCCGATACTTTAATCGACAGACTGGCAGATTTCGAGAAATGCGATGCTGAAAGAGCGCTAGCAACGATAGAGCTCATCTGTAGGATTCCATCAGGAGTGGCGGCGTTTGCGGCGCATGCTCTGACCGTGCCGCTGCTAGTGAAAGTGATCTTGAAGATCTCGGATCGTGCAACAGAGTACGCGGCTAGGGCTCTGCTTTCGATCTGCTCGACGTCGGAGCAGCGCCAGAGAGACGCTGTGGCGGCGGGGATATTGACTCAGTTACTGCTTTTGGTACAGAGCGATTGCACGGATCGAACTAAGAGAAAGGCGCAGTTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTGAAGATTCGTTTGGAAATTCAGACGATTTTGGTTGCAGTGAGATCGTACTACAGTTCTGA 1248 53.04 MPVSLEPLDLVGVLIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPITRVPLSDFALIPNHTLRRLIQDWCVANRSSGVERIPTPKQPADPGSVRTLFGQVSSRSNPLHSRLSALRQLRGLARDSDKNRCVISSHNATEILIDIIFQNSDSSELTHEALAVLVMFQLTESDCESVASEPHRIAYLSHLLFNSSIDVRVNSAALVELVIAGTRSPELRAEISSVNEIFEGVIEILRNPISYPRALKIGIKALFALCSVKQTRHNAVSAGAADTLIDRLADFEKCDAERALATIELICRIPSGVAAFAAHALTVPLLVKVILKISDRATEYAARALLSICSTSEQRQRDAVAAGILTQLLLLVQSDCTDRTKRKAQLLLKLLRDSWPEDSFGNSDDFGCSEIVLQF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6791780 6793238 + Conep10aG0102300.1 Cone10ag0996 446794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0996 415 Gene3D - 85 253 IPR011989 -
Cone10ag0996 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 84 IPR013083 -
Cone10ag0996 415 SUPERFAMILY ARM repeat 118 392 IPR016024 -
Cone10ag0996 415 FunFam U-box domain-containing protein 31 14 89 - -
Cone10ag0996 415 ProSiteProfiles U-box domain profile. 14 88 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0996 415 SMART Ubox_2 18 81 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0996 415 Gene3D - 254 393 IPR011989 -
Cone10ag0996 415 PANTHER WDSAM1 PROTEIN 15 397 IPR045185 GO:0061630(InterPro)
Cone10ag0996 415 Pfam U-box domain 15 86 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone10ag0996 415 SUPERFAMILY RING/U-box 9 89 - -
Cone10ag0996 415 CDD RING-Ubox_PUB 16 68 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0996 Cone-Chr10:6791780 Cone3ag0136 Cone-Chr3:756341 1.51E-64 dispersed
Cone7ag1892 Cone-Chr7:12152344 Cone10ag0996 Cone-Chr10:6791780 3.11E-15 dispersed
Cone10ag0996 Cone-Chr10:6791780 Cone3ag1183 Cone-Chr3:30496195 8.70E-277 wgd
Cone10ag0996 Cone-Chr10:6791780 Cone8ag1127 Cone-Chr8:9943296 3.06E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0996 - - - 0.0