Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag0997 ATGCAAGGTGAAAGCAGCAGAATGGATTCCTTCCCCAAAAGTGCAGATATTGGGCAGGGATCGGTTTCCAATAGCAATATGATGAGTCGCCAGACTAGGCCAAGTAATATGTTACATCCTATAGAAAGTCGGTTGTCAAATTCTATGATGTCTTCTGGTGAAACAACACACATAAGTTCTACTATTCATGATGGTCAGAACTTAAACAGCTGGACTTCTGGTGGAAATAGTTCTGGGTTTAATCTACAAAATGAGTTCAATGATGATAGAATGAAAGTGGATGTTTGGTCGTCTCCATTCAGTATCCATCCTGGCAATGGTGCCAGATCAGTGGAAAGGCATTCTGAGCCAACTAATAATAATTTACCCTGGGGAGGTGATATTGGTTCCAGTCATAATGAGGTTAGAAATGGGTTCTCATTTTTACGAGGTTCAAGTTCTAATAGTATCCCTCAAAGTGAGAATCTAAATGCCGAACATGAGGGAAGTAGTGGTAATGGAAGGCAGGGTATGGGAGCTGTTGTAGACTCTAATCTCACCATGTCAAGTGGATTCGATATGGAGCAAACTTCTTCTGCTGATGCTTTGTCTGATAAAACTGCAACTTCATCTGGAAGCGGTGATTATATGGAGGAAAATGATGGTGGATCTAGCTCATCTGTGCGAATATGGGGTATATCCTGCAAGAGAAAGGCCCTTGAAGGAACTTCCAGACAATCTTTTCCTGGTGAAAGTTCAAGTTCCTTCCCACAACCAGAAACTGGCTGGCATGCTAGTACTTCGACCTATGGTCAGAGCAGTTTAAGTTTGTCAACACCTGCATGTATATCTCCTCCTGTGGCTCCTCCAGAGTCACATAACGTTAGGATTGGGGCTGGTAGGAGGGCACTAACTTATAATTCCTTTCCATCTTCAGGTGTTACAGAAAACTTAGAAAGTCCTTTGACAAACTTGGGAAGGAGAGCAACTGCATGGACTCCACAAGACTCAGTGCCATTCCATTTATTACCAGCAGGAAGTTCCGGGCACCCAAATATTTACCCCACTCATCAACTATCTTCACCTAGTCCTTTTACCGATTCTGCAGATCTGAGGTCAACAGCAACACTGGCTGCCAATTTCAGAGCTCCTCAGGGTCAGTCTCATACTATGCAAACTCCTGGTTCTTCAAGGAGCATTGATCTTTTTCCCTGGGTAGGGGTTTCCACTTCAAGACTGGGCAGTTTATCTAATTCCTCTTTTCATGGAGAAAGCAACTCTGCAGGTCGAGAAGATTTGAATCTACGGAGCAGTACCAGGTACAGTGGTGGGAATCCCACATTTTTACCTGGTCCTGAAATGGGAAATTCATCTCAAGATCCGACAACCTGGAATTTAGGATCTGGAATCACGAGCACTTCAGGTGTTCCATCAACTATTCATGTTGGCCCTGTATCAAGCATTTCTTTCCCAAATCCTGCACATACTCCTCCCCACAATCCCCCAACAGAAAACCAGCAAAGAGTATCAGAATTTGCACCTTGGTCTTTGTTTCCAAATGCTGCCTCCGAATCCGGAACCCATGCTGGTCATTTTTCTTCTTCACCTTCAGGTTTTCCATCACAGGAGCACACAGCATTGTTCAATGGACCTAATCGCCGGGGGCATCATCAACCGAATTCTAGGTCACCTTTTTTCCTGGAGAGACTTGGCAACAATTCTCTTGGGACTCCTCATTCGTTGCGAGCATTAGCTGATGACATGGAAGGCAGGCGACGGCTAATAACTGAGATTCGTCAAGTCTTGAATGCCATGCGTAGGAATGATTTCCGTGTTGAGGATCATATGCTATTGGACCCGTTCATAGTTCATCCTCTGCCTGAAGTGCACGACAGGCACAGGGACATGCGCCTTGACGTTGATAACATGTCTTATGAGGAACTTTTGGCATTGGAAGAACGCATGGGAGATGTTAGCACCGGATTAGGCGAGGCAGCCATTATGAAGCTTATGAAACAGAGAAAATATGAATCAATGATATCAGAATCTCCACCGGATATGGAACCATGTTGTGTCTGTCAGGAACACTATGCTGATGGAGATGATATGGGGACACTCGATTGTGGGCATGACTTCCATATGGATTGCATCAAGCAGTGGCTGTTGCAGAAGAATCTCTGCCCCATCTGTAAAACGTCAGCGTTGCAGACAGAGAAGGAAGATAAGTGA 2208 44.66 MQGESSRMDSFPKSADIGQGSVSNSNMMSRQTRPSNMLHPIESRLSNSMMSSGETTHISSTIHDGQNLNSWTSGGNSSGFNLQNEFNDDRMKVDVWSSPFSIHPGNGARSVERHSEPTNNNLPWGGDIGSSHNEVRNGFSFLRGSSSNSIPQSENLNAEHEGSSGNGRQGMGAVVDSNLTMSSGFDMEQTSSADALSDKTATSSGSGDYMEENDGGSSSSVRIWGISCKRKALEGTSRQSFPGESSSSFPQPETGWHASTSTYGQSSLSLSTPACISPPVAPPESHNVRIGAGRRALTYNSFPSSGVTENLESPLTNLGRRATAWTPQDSVPFHLLPAGSSGHPNIYPTHQLSSPSPFTDSADLRSTATLAANFRAPQGQSHTMQTPGSSRSIDLFPWVGVSTSRLGSLSNSSFHGESNSAGREDLNLRSSTRYSGGNPTFLPGPEMGNSSQDPTTWNLGSGITSTSGVPSTIHVGPVSSISFPNPAHTPPHNPPTENQQRVSEFAPWSLFPNAASESGTHAGHFSSSPSGFPSQEHTALFNGPNRRGHHQPNSRSPFFLERLGNNSLGTPHSLRALADDMEGRRRLITEIRQVLNAMRRNDFRVEDHMLLDPFIVHPLPEVHDRHRDMRLDVDNMSYEELLALEERMGDVSTGLGEAAIMKLMKQRKYESMISESPPDMEPCCVCQEHYADGDDMGTLDCGHDFHMDCIKQWLLQKNLCPICKTSALQTEKEDK 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6797150 6806543 - Conep10aG0102400.1 Cone10ag0997 446795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag0997 735 MobiDBLite consensus disorder prediction 16 40 - -
Cone10ag0997 735 ProSiteProfiles Zinc finger RING-type profile. 683 724 IPR001841 -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 234 269 - -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 516 558 - -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 344 362 - -
Cone10ag0997 735 SUPERFAMILY RING/U-box 682 727 - -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 342 362 - -
Cone10ag0997 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 728 IPR013083 -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 409 500 - -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 112 221 - -
Cone10ag0997 735 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 226 728 IPR045191 GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone10ag0997 735 MobiDBLite consensus disorder prediction 238 269 - -
Cone10ag0997 735 FunFam E3 ubiquitin-protein ligase MBR2 650 728 - -
Cone10ag0997 735 Pfam Ring finger domain 683 724 IPR001841 -
Cone10ag0997 735 SMART ring_2 683 723 IPR001841 -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 105 221 - -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 409 486 - -
Cone10ag0997 735 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag0997 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0997 Cone-Chr10:6797150 Cone7ag1361 Cone-Chr7:9875390 1.87E-37 dispersed
Cone10ag0997 Cone-Chr10:6797150 Cone17ag0852 Cone-Chr17:6762013 1.20E-51 wgd
Cone10ag0997 Cone-Chr10:6797150 Cone20ag0198 Cone-Chr20:851450 2.33E-58 wgd
Cone10ag0997 Cone-Chr10:6797150 Cone3ag1184 Cone-Chr3:30512251 0 wgd
Cone10ag0997 Cone-Chr10:6797150 Cone4ag1588 Cone-Chr4:12129337 4.34E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g391 Blo02g00829 Blo15g00751 . . . . . Bma12g00439 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1184 Cone10ag0997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015397 4 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 11