Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1001 ATGGAGATCTCACAAGCGGCGCCTCCTTCCGTCAGTGGCGATGGTGTGACCGACGCTGCTTCGATAGCTAACGTCGAAGCTTTGGCCGTCTCTTCATCCTTTTCGCCGCCGATTGATTCGAAGGAGAAGGAAATGAACGCGACGACGACGTCGTCGTCGAGTATGGCGAAGTATGACGACGATGAGGAAGAGGACGTGTGCAGGATCTGTAGGAACCCTGGAGACGCCGAGAACCCCCTTAGATATCCCTGCGCTTGTAGCGGTAGCATAAAATTTGTGCACCAGGATTGTCTCCTTCAGTGGCTCAATCACAGCAACGCTCGCCAATGTGAGGTCTGTAAACATCCTTTTTCGTTTTCGCCTGTATATGCTGAGAATGCACCGGCAAGGCTTCCTTTTCAGGAATTTGTTGTTGGAATTACAATGAAAGCTTGCAACGTCCTGCAATTTTTCTTGCGCCTTAGTTTTGTGCTATCCGTTTGGCTCCTCATCATACCATTCATCACGTTTTGGATCTGGCGGCTGGCTTTTGTGAGGACATTTGGTGAGGCACAGAGATTATTTATGAGTCATTTGTCAACTACTATAATTCTCACAGATTGTCTACACGGCTTCCTTCTTTCTGCTGGCATTGTATTTATTTTTCTTGGGGCCACTTCCTTGAGGGATTACTTTAGGCATTTGAGGGAGCTGGGAGGACAAGATGCTGATCGAGAAGATGATGCAGATAGAAATGGTGCTCGTGCAGCAAGAAGAATTCCTGGGCCAGCTAATAGAAACATTGCTGGTGAGGTAAATGGTGAAGAAGCTGGTGGAGCACAAGGAATTGCTGGGGCGGGTCAAATGATTAGAAGGAATGCAGAAAATGTTGCTGTTCGCTGGGAGATGCAAGCTGCTCGTATTGAGGCTCATGTTGAACAGATGTTTGATGGTTTGGATGATGCAGATGGTGCAGAGGATGTGCCATTTGATGAGCTTGTTGGCATGCAGGGCCCTATGTTTCATTTGGTTGAAAATGCCTTCACCGTTCTGGCTAGCAATATGATATTCCTTGGTGTGGTAATCTTCATGCCCTTTTCCTTGGGTCGGATTATACTTTACAATGTAACTTGGCTCTTCTCCGCTGCTAGTGGTCCGGTTTTGTCAACAGCAACGCCCCTTACCGAATCAGCTCTCTCCTTGGCAAATATTACATTGAAGAATGCCTTGACTGCTGTTTCAAATTTGTCCACAGACAGCCAAGAAAGTAGTTTGCCGGGCCTGGTAGCGGAAATGTTGAAAGCAAACTCAAGTGCACTAAACAAAGTTGCAAACAACATTACTGGTCCTGTTTCATCTGATCTCTTGAAAGGGGCAGCCATTGGAAGATCACAGCTCTCTGATGTTACAACTCTAGCTATAGGTTATATGTTTATATTTTCTCTTATTTTCTTATACCTCAGCATTGTGACTTTGATTCGATACGCTAAGGGTGAGCCATTGACAATGGGGAGATTATATGGTATTGTATCTATAGCCGAGACTATTCCTTCGCTCTTTAGGCAGTTCCTGGCAGCAATGAGGCATTTGATGACCATGATTAAGGTTGCTTTCCTTTTGGTCATTGAACTTGGGGTATTTCCTTTGATGTGTGGATGGTGGCTAGATGTCTGCACTGTAAGGATGTTCGGGAAATCAATGGCTCAAAGGGTTCAATTCTTTTCAGCCTCTCCATTAGCAAGCTCATTGGTTCACTGGGTTGTTGGAATTGTATATATGCTGCAAATCAGCATATTTGTCAGCCTTCTCCGTGGGGTTTTGCGTAATGGGGTTCTATACTTTCTCCGAGATCCAGCTGATCCAAACTACAATCCATTCCGTGATTTAATTGATGATCCTGTCCACAAGCATGCTCGTAGGGTTCTGTTATCTGTCGCAGTTTATGGGAGTTTAATTGTGATGCTGGTATTTCTACCAGTCAAATTGGCTATGTGGATGGCACCTTCCATGTTTCCTCTTGATATCTTAGTATCCGACCCCTTTACTGAAATTCCAGCTGACATGCTTCTCTTTCAAATTTGCATTCCATTTGCCATTGAGCATTTTAAACTGCGGACAACTATCAAATCTCTTCTTCGGTATTGGTTCACTGCAGTTGGCTGGGCTCTTGGCTTAACAGCTTTCCTACTTCCCAGGCCTGATGACAATGTTGGCCAGGAAAATGGAAATGGGGAACCTGCAAGGCAGGAAGGCTTACAGGTAGTACAATTTCGTGGGCAGGATCAGGCACCACTGGCTTTTGCTGGTGCAGATGAGCCAGGCCCAGGAACGTATGCAGCAGGAAATGCAAATAATGCAGAGGAGTATGATGGTGATGAACAATCTGATTCAGACAGGTATGGATTCGCTTTCCGCATTGTAATCCTGTTGGTTGTGGCCTGGATGACTCTTCTTATCTTTAATTCAGCATTGATAGTTGTCCCAGTGTCGCTTGGACGGGCATTATTCAATGCCATTCCACTTCTGCCAATAACTCATGGCATCAAATGCAATGACCTATATGCTTTTATCATTGGAAGCTATGTAATATGGACTGCCATAGCTGGGGCCCGATATTCCATTGAGCATATTAGAACAAAGAGAGCTGCAGTTTTGTTTGGCCAGATCTGGAAGTGGTGTGCCATTGTTATGAAGAGTTCGGCACTTTTGTCAATATGGATTTTTGTTATTCCAGTATTGATTGGGCTGCTCTTTGAGCTTTTGGTGATTGTCCCAATGCGGGTCCCAGTGGATGAAAGCCCAGTTTTTCTTTTGTATCAGGACTGGGCATTAGGTCTCATTTTCCTTAAGATCTGGACTAGACTGGTTATGTTGGATCACATGATGCCTCTAGTAGACGAAAGCTGGCGACTAAAATTCGAGAGGGTGAGAGAAGACGGTTTCTCGAGGCTACGGGGTCTTTGGGTTCTCAAAGAAATAGTTGTTCCAATCATAATGAAGCTCTTGACAGCACTTTGTGTTCCTTACGTTATATCCAGAGGAGTATTTCCCGCGCTTGGTTACCCCTTAGTAGTCAACTCGGCCGTTTACCGTTTTGCCTGGCTTGGCTGCCTTTGCTTCAGTCTCGTATACTACTGTGCAAAGAGATTCCATATTTGGTTCACTAATCTTCACAACTCAATACGAGATGACCGTTATCTGATTGGCAGACGGCTTCATAATTTTGGTGAAAACACACGAGAGAGGCAAAATGAGGTAGAAACTGTGTCCGAAACCTTATTAACTACTAATTTGCAGGGAAACAACGGTCAAGAAGCTGATTTAGGGTTACGGATGAGACGTGGTAACCAAGTAGCTGCTGCCCAATTATAA 3351 44.91 MEISQAAPPSVSGDGVTDAASIANVEALAVSSSFSPPIDSKEKEMNATTTSSSSMAKYDDDEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAENAPARLPFQEFVVGITMKACNVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRTFGEAQRLFMSHLSTTIILTDCLHGFLLSAGIVFIFLGATSLRDYFRHLRELGGQDADREDDADRNGARAARRIPGPANRNIAGEVNGEEAGGAQGIAGAGQMIRRNAENVAVRWEMQAARIEAHVEQMFDGLDDADGAEDVPFDELVGMQGPMFHLVENAFTVLASNMIFLGVVIFMPFSLGRIILYNVTWLFSAASGPVLSTATPLTESALSLANITLKNALTAVSNLSTDSQESSLPGLVAEMLKANSSALNKVANNITGPVSSDLLKGAAIGRSQLSDVTTLAIGYMFIFSLIFLYLSIVTLIRYAKGEPLTMGRLYGIVSIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTVRMFGKSMAQRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMWMAPSMFPLDILVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTAFLLPRPDDNVGQENGNGEPARQEGLQVVQFRGQDQAPLAFAGADEPGPGTYAAGNANNAEEYDGDEQSDSDRYGFAFRIVILLVVAWMTLLIFNSALIVVPVSLGRALFNAIPLLPITHGIKCNDLYAFIIGSYVIWTAIAGARYSIEHIRTKRAAVLFGQIWKWCAIVMKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRLKFERVREDGFSRLRGLWVLKEIVVPIIMKLLTALCVPYVISRGVFPALGYPLVVNSAVYRFAWLGCLCFSLVYYCAKRFHIWFTNLHNSIRDDRYLIGRRLHNFGENTRERQNEVETVSETLLTTNLQGNNGQEADLGLRMRRGNQVAAAQL 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6846126 6851719 + Conep10aG0102800.1 Cone10ag1001 446799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1001 1116 SMART ringv_2 66 114 IPR011016 GO:0008270(InterPro)
Cone10ag1001 1116 MobiDBLite consensus disorder prediction 33 59 - -
Cone10ag1001 1116 FunFam Probable E3 ubiquitin ligase SUD1 52 125 - -
Cone10ag1001 1116 ProSiteProfiles Zinc finger RING-CH-type profile. 59 120 IPR011016 GO:0008270(InterPro)
Cone10ag1001 1116 PANTHER SSM4 PROTEIN 51 1079 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Cone10ag1001 1116 Pfam RING-variant domain 67 113 IPR011016 GO:0008270(InterPro)
Cone10ag1001 1116 CDD RING_CH-C4HC3_MARCH6 66 115 - -
Cone10ag1001 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 125 IPR013083 -
Cone10ag1001 1116 ProSiteProfiles Zinc finger RING-type profile. 67 114 IPR001841 -
Cone10ag1001 1116 MobiDBLite consensus disorder prediction 33 55 - -
Cone10ag1001 1116 SUPERFAMILY RING/U-box 61 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1001 K10661 - - mdm:103428221 1773.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1001 Cone-Chr10:6846126 Cone11ag0688 Cone-Chr11:4679728 3.32E-07 dispersed
Cone10ag1001 Cone-Chr10:6846126 Cone3ag0981 Cone-Chr3:28620068 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39