Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1003 ATGGCTCAGTTGCAAGCTCAGCCTCAAGGCGGGAGTGTGAATGCGGCGGAGAATGGCGGGGTTAACCAGCTCCTTTCAACTACGTCGTTGTATGTGGGAGATCTTGAATTCAATGTGACTGATTCGCAGGTCTATGATCTGTTCAGTCAGATGGGTCAGGTGGTTTCCGTTAGGGTTTGCAGGGACATGACGACCAGACGATCTCTTGGCTATGGTTATGTCAACTATAGCAACCCTCAAGATGCTGGAAGGGCATTGGAAGCGCTGAACTTTACTCCTCTTAATGGAAAGAATATCAGAATTATGTATTCCCATCGCGACCCCAGTATTCGCAAAAGTGGAGCTGGAAATATTTTTATCAAGAATTTAGACAAGGCAATTGACCACAAAGCATTACTGGATACATTTTCTGTATTTGGAAACATCCTTTCTTGTAAGGTAGCTACAGACTCTTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTCGATAATGAGGAATCTGCCCTGAAAGCTATAGAGAAGTTGAATGGTATGCTGCTGAATGACAAGCAAGTTTTTGTGGGGCCCTTCCTTCGAAGACAGGAAAGAGAAAGTGTTACTGACATGTCAAAATTCAACAACGTCTTTGTTAAGAATCTATCTGAATCGGTAACTGAAGAAGATTTGAACAAAACTTTTGGAGAGTTTGGAGCACTCACTAGTGTTGTGGTAATGAGGGATGGGGATGGTAAATCAAAGGGGTTTGGTTTTGTGAACTTTGAGAATGCAGATGATGCTGGTAAGGCTGTTGAGGTTCTGAATGGAAATAAGTTTGACGACAAGGAATGGTATGTTGGTAGAGCCCAGAAGAAATACGAGAGAGAGGTTGAACTAAAAAGTCGATTTGAGCAGAATGTGAAGGAGACAGCTGATAAGTATCAGGGAACAAACTTATATTTTAAAAATTTAGATGATAGCATTGGTGATGAGAAACTTAATGAGCTTTTCTCTCCCTTTGGTACCATAACCTCCTGCAAGGTTATGCGGGACCCTAATGGAATAAGTAGAGGGTCTGGGTTTGTTGCCTTCTCAACTCCTGAAGAAGCATCTAGAGCTCTCTCTGAAATGAATGGAAAAATAGTTGTGAGCAAACCTCTGTATGTTGCACTTGCACAAAAGAAAGAAGATAGAAGGGCTAGGTTGCAGGCTCAATTTTCTCAGATGCGGCTAGTTGGAATGCCACCTTCAGTGGGTCCTCGCATGCCAATGTATCCCCCAGGTGGCCCAGGTGTTGGACAGCAAGTATTCTATGGCCAAGCTCCACCTGCTATGATTCCCACTCAGCCTGGCTTTGGTTATCAGCAGCAACTCATTCCTGGTATGAGGCCAGGTGGGGCCCCCATACCGAACTATTTTGTACCTATGGTTCAACAGCAGGGTCAACATCCAGGTGGTCGACGAAGTGGAGCGGTCCAGCAAAGCCAGCAGCAGCCTCTTCCCCTAATGCAACAACAGATGCTTCAAAGGGGGCGCATCTATCGTTATCCTCCTGCTCGAGGAATGCCTGGTGTTGCTGGAGGAGGGTTTCCGGTTCCATATGACATGGGACCTCCGCAGCCACTTTCTTCGGGTTTTTTGGCTACTGCTCTGGCTAATGCTTCTCCAGAACAGCAGAGAACGATATTGGGTGAGAATCTTTACCCGCTCGTGGAAAAGCTGGAGTCGGACAATGCGGCTAAGGTAACAGGAATGCTTCTTGAGATGGATCAAACCGAAGTTTTACATCTGCTTGAATCACCAGAAGCTTTGAAAGCTAAAGTGGCTGAGGCTATGGATGTTCTGAGAAATGTTGCTCAGCAGCATCAACAGACAGGCAATGCAGCCGCTGGTCAATTTGCCTCATTGTCGCTAACTGACAACCTTGTTTCTTGA 1914 45.56 MAQLQAQPQGGSVNAAENGGVNQLLSTTSLYVGDLEFNVTDSQVYDLFSQMGQVVSVRVCRDMTTRRSLGYGYVNYSNPQDAGRALEALNFTPLNGKNIRIMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALLDTFSVFGNILSCKVATDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVFVGPFLRRQERESVTDMSKFNNVFVKNLSESVTEEDLNKTFGEFGALTSVVVMRDGDGKSKGFGFVNFENADDAGKAVEVLNGNKFDDKEWYVGRAQKKYEREVELKSRFEQNVKETADKYQGTNLYFKNLDDSIGDEKLNELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALSEMNGKIVVSKPLYVALAQKKEDRRARLQAQFSQMRLVGMPPSVGPRMPMYPPGGPGVGQQVFYGQAPPAMIPTQPGFGYQQQLIPGMRPGGAPIPNYFVPMVQQQGQHPGGRRSGAVQQSQQQPLPLMQQQMLQRGRIYRYPPARGMPGVAGGGFPVPYDMGPPQPLSSGFLATALANASPEQQRTILGENLYPLVEKLESDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQHQQTGNAAAGQFASLSLTDNLVS 637
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 6865475 6869685 - Conep10aG0103000.1 Cone10ag1003 446801
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1003 637 FunFam Polyadenylate-binding protein 114 197 - -
Cone10ag1003 637 SUPERFAMILY PABC (PABP) domain 490 619 IPR036053 GO:0003723(InterPro)
Cone10ag1003 637 PANTHER RNA BINDING PROTEIN 23 208 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cone10ag1003 637 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 536 613 IPR002004 GO:0003723(InterPro)
Cone10ag1003 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 FunFam Polyadenylate-binding protein 532 614 - -
Cone10ag1003 637 CDD RRM2_I_PABPs 114 190 IPR045305 -
Cone10ag1003 637 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 29 609 IPR006515 GO:0003723(InterPro)
Cone10ag1003 637 Gene3D - 197 292 IPR012677 -
Cone10ag1003 637 CDD RRM4_I_PABPs 309 387 - -
Cone10ag1003 637 FunFam Polyadenylate-binding protein 293 398 - -
Cone10ag1003 637 SMART poly_2 548 611 IPR002004 GO:0003723(InterPro)
Cone10ag1003 637 SUPERFAMILY RNA-binding domain, RBD 207 391 IPR035979 GO:0003676(InterPro)
Cone10ag1003 637 Gene3D - 5 109 IPR012677 -
Cone10ag1003 637 SMART rrm1_1 311 383 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 SMART rrm1_1 208 280 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 SMART rrm1_1 117 189 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 SMART rrm1_1 29 102 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 FunFam Polyadenylate-binding protein 198 292 - -
Cone10ag1003 637 Gene3D - 110 196 IPR012677 -
Cone10ag1003 637 CDD RRM1_I_PABPs 29 108 IPR034364 -
Cone10ag1003 637 Pfam RNA recognition motif 30 100 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 Pfam RNA recognition motif 209 277 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 Pfam RNA recognition motif 312 380 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 Pfam RNA recognition motif 118 185 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 Gene3D - 533 615 - -
Cone10ag1003 637 FunFam Polyadenylate-binding protein 13 113 - -
Cone10ag1003 637 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676(InterPro)
Cone10ag1003 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 Gene3D - 293 395 IPR012677 -
Cone10ag1003 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 SMART rrm2_1 117 189 IPR003954 GO:0003676(InterPro)
Cone10ag1003 637 SMART rrm2_1 208 280 IPR003954 GO:0003676(InterPro)
Cone10ag1003 637 SMART rrm2_1 311 383 IPR003954 GO:0003676(InterPro)
Cone10ag1003 637 SMART rrm2_1 29 102 IPR003954 GO:0003676(InterPro)
Cone10ag1003 637 CDD RRM3_I_PABPs 206 285 - -
Cone10ag1003 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723(InterPro)
Cone10ag1003 637 Pfam Poly-adenylate binding protein, unique domain 543 608 IPR002004 GO:0003723(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1003 Cone-Chr10:6865475 Cone3ag0985 Cone-Chr3:28639047 0 dispersed
Cone10ag1002 Cone-Chr10:6851848 Cone10ag1003 Cone-Chr10:6865475 0 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1003 K13126 - csv:101219802 975.696