Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1012 ATGTCTTCGTTTCCGAAATCTTCTCTCTCCTTTCTCGCTCTTCTATCTCTCCTCGTCATCTTCTCCTTCGCCGTCTCCTTCTCTTCCGCCACGGACATGTCCATCATCGAATACAACGCGGAGCACAACATGGACGTGCCTGAGCGGACTGAGGGAGATCTCAGAGCCTTATACGAGTCGTGGTTAGTCAAACATGGAAAAGCGTACAACGCTCTTGGCGAGAAGGAGAAGCGGTTCGAGATCTTCAAAGATAATCTCCGTTTCATCGATGAAAATAACAGAGAGAACCGGACTTACCGTCTTGGACCGAACCGGTTCGCAGATCTCACAAACGACGAGTACCGATCGATGTTCTTAGGGAAATCGGGGAAGAAGGATAGGATCACTGAGAAGAAGAAGAGTGATAGGTATAAGTTTCTCGTAGGTGAGGAGCTGCCTTTGCATGTTGATTGGAGAGAGAAGGGAGCTGTTGCAGATGTTAAAGATCAAGGCCAGTGTGGGAGTTGTTGGGCATTCTCAACAATTGCTGCAGTTGAAGGATTAAATCGGATCGTAACTGGCGAGCTAATTTCTTTATCAGAGCAAGAACTTGTAGACTGCGACAGAACATACAACCAAGGGTGCAATGGAGGGCTTATGGACAATGCCTTCCAGTTCATCCTCAACAATGGTGGAATAGATACTGAAGAGGACTACCCTTACCGAGCACGTGATGGGACTTGCGATCCGATCCGGAAAAATGCTAAGGTTGTTACCATTGACGGATATGAAGATGTTCCAGAGAATGATGAAAACTCTTTGAAGAAGGCTGTTGCCAATCAACCTGTTAGTGTGGCCATTGAAGCTGGTGGCAGGGCTTTCCAACTCTACCAATCGGGTGTATTCACTGGAATATGTGGGACTGAGCTAGACCATGGTGTCGTAGCTGTTGGATACGGAATCCAAGATGGTAAAGATTACTGGATTGTTCGGAACTCATGGGGCCCCTCATGGGGTGAAAACGGTTACATCAAGTTGGCGCGGAACTTGGTCAATACCACAACCGGCAAATGCGGGATTGCAATCGAGCCTTCATACCCTATCAAAACTGGACAAAACCCTCCAAAACCAAGCCCTTCCCCTCCTTCCCCCGTACCGCCTCCAACTGTCTGTGATGACTACTACTCTTGTCCTCAATCAACCACTTGCTGTTGCATTTATCAGTATGGTAGTTACTGTTTTGGTTGGGGTTGTTGCCCTCTCGAATCTGCCACTTGTTGTGAGGATAATTACAGTTGCTGCCCTCATGATTATCCCATCTGCAACCTTGAAGCCGGAACATGCCAATTGAGTAAGAACAATCCGATGGGAGTTGCGTTGTTGAAGCGGGGCCCAGCCCGGAGAACTTGGAACTCATGGAATCTAGGGAGAATGGTTGTTGGTGCTTGA 1428 47.9 MSSFPKSSLSFLALLSLLVIFSFAVSFSSATDMSIIEYNAEHNMDVPERTEGDLRALYESWLVKHGKAYNALGEKEKRFEIFKDNLRFIDENNRENRTYRLGPNRFADLTNDEYRSMFLGKSGKKDRITEKKKSDRYKFLVGEELPLHVDWREKGAVADVKDQGQCGSCWAFSTIAAVEGLNRIVTGELISLSEQELVDCDRTYNQGCNGGLMDNAFQFILNNGGIDTEEDYPYRARDGTCDPIRKNAKVVTIDGYEDVPENDENSLKKAVANQPVSVAIEAGGRAFQLYQSGVFTGICGTELDHGVVAVGYGIQDGKDYWIVRNSWGPSWGENGYIKLARNLVNTTTGKCGIAIEPSYPIKTGQNPPKPSPSPPSPVPPPTVCDDYYSCPQSTTCCCIYQYGSYCFGWGCCPLESATCCEDNYSCCPHDYPICNLEAGTCQLSKNNPMGVALLKRGPARRTWNSWNLGRMVVGA 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7009428 7012678 + Conep10aG0103900.1 Cone10ag1012 446810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1012 475 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Cone10ag1012 475 Pfam Granulin 395 442 IPR000118 -
Cone10ag1012 475 Pfam Cathepsin propeptide inhibitor domain (I29) 58 114 IPR013201 -
Cone10ag1012 475 SMART Inhibitor_I29_2 58 114 IPR013201 -
Cone10ag1012 475 SUPERFAMILY Granulin repeat 381 415 - -
Cone10ag1012 475 SUPERFAMILY Cysteine proteinases 52 361 IPR038765 -
Cone10ag1012 475 SMART pept_c1 145 361 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone10ag1012 475 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 163 174 IPR000169 -
Cone10ag1012 475 Gene3D Cysteine proteinases 34 363 - -
Cone10ag1012 475 FunFam Cysteine protease 1 34 363 - -
Cone10ag1012 475 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 54 361 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cone10ag1012 475 Gene3D Granulin 381 444 IPR037277 -
Cone10ag1012 475 CDD Peptidase_C1A 146 360 IPR039417 -
Cone10ag1012 475 Pfam Papain family cysteine protease 145 361 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone10ag1012 475 PRINTS Papain cysteine protease (C1) family signature 163 178 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone10ag1012 475 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone10ag1012 475 PRINTS Papain cysteine protease (C1) family signature 305 315 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone10ag1012 475 SMART GRAN_2 384 441 IPR000118 -
Cone10ag1012 475 FunFam Cysteine protease 1 381 444 - -
Cone10ag1012 475 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 303 313 IPR025660 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1012 K25900 - - rcu:8288144 694.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1012 Cone-Chr10:7009428 Cone8ag0142 Cone-Chr8:745722 1.61E-157 dispersed
Cone20ag0113 Cone-Chr20:504622 Cone10ag1012 Cone-Chr10:7009428 1.34E-31 transposed
Cone10ag1012 Cone-Chr10:7009428 Cone17ag0859 Cone-Chr17:6816364 5.85E-194 wgd
Cone10ag1012 Cone-Chr10:7009428 Cone20ag0206 Cone-Chr20:885790 4.93E-193 wgd
Cone10ag1012 Cone-Chr10:7009428 Cone3ag0991 Cone-Chr3:28721852 1.03E-303 wgd
Cone10ag1012 Cone-Chr10:7009428 Cone6ag1416 Cone-Chr6:11377080 8.01E-147 wgd
Cone10ag1012 Cone-Chr10:7009428 Cone8ag1221 Cone-Chr8:10329136 2.91E-61 wgd
Cone10ag1012 Cone-Chr10:7009428 Cone9ag1343 Cone-Chr9:10079292 1.40E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71