Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1017 ATGGCGGCTACACCATCTTCAACTCTCCGAGCTTCATCGCTCAGAAATTCATCGCTTTCTCTCTCCTCTAAGCTCCCTCTGCCTCCGGCATTTTCTGTTACTCTACGATCTCGCCGCCGATCGTCTCAACAGCTTGTATTTGTCGTCTCGGCGAGTGCTGACTCCAAGCCGACGGTTCTAGTAGCTGAGAAGTTAGGTGAAGCTGGACTTGATCTTCTTAAGGAGTTCGCTAATGTCGATTGCGCGTATAACTTGAGTCCTGAGGAGCTAAAGACTAAGATCTCGCTCTGTGACGCTCTTATTGTGCGTAGTGGAACCAAGGTTAATCGTGAGGTGTTCGAGTCTTCTGGAGGAAGGTTGAAGGTGGTTGGCAGAGCTGGTGTTGGTATTGACAATGTGGATCTGGGAGCAGCGACTGAGCATGGTTGCTTGGTGGTCAATGCGCCGACTGCTAACACTGTTGCTGCTGCTGAGCATGGGATCGCTCTCTTGACTGCTATGGCTAGGAACGTAGCACAAGCTGATGCATCTGTTAAGGCTGGAAAATGGCTGCGCAACAAATATGTGGGTGTATCTCTTGTTGGGAAAACACTGGCTGTAATGGGCTTTGGGAAAGTCGGGTCAGAAGTTGCTCGCCGCGCTAAGGGTCTTGGTATGCATGTGATTGCACATGATCCATATGCCCCAGCAGACCGTGCTCGTGCAGCTGGTGTTGAGCTTGTCAGCTTTGATGAAGCCATAGCTACTGCAGACTTCATCTCTTTGCATATGCCTCTTACCCCTGCTACAAACAAGATTCTTAACGATGAATCCTTTGCAAAGATGAAGAAAGGAGTTCGAATAGTTAATGTTGCTCGTGGTGGGGTGATTGATGAAGAAGCTTTAGTGAGGGCATTGGATGCTGGGATCGTTGCTCAGGCGGCACTTGATGTGTTCACTGTTGAACCGCCATCTACGGAAAGCAAGTTGGTTCAGCATGAGAATGTGACTGTGACTCCTCACCTTGGTGCCAGTACCAAGGAAGCTCAGGAAGGAGTAGCTATTGAAATTGCTGAAGCCGTTGTTGGAGCCCTAAAAGGGGAGCTTGCTTCTACTGCAGTCAATGCACCCATGGTTCCTGCTGAGGTTTTAAGTGAGCTGAAACCTTATGTAGAACTAGCCGAGAAGCTAGGAAGACTAGCTGTCCAACTAGTAGCTGGAGGAAGCGGTGTCAAAAACGTGAAAGTATCGTACTCTTCTTCAAGAGCCCCAGATGATCTCGACACTAGGCTTCTCCGTGCCATGATCACCAAGGGTCTAATTGAACCCATCTCTAGCGTCTTTGTCAACTTGGTCAATGCTGATTTCACCGCCAAACAAAGAGGACTCAGAATAATCGAGGAAAGAATCCTTCAAGATGGTTCACCTGAGTCTCCCTTAGAATCCATCCAGGTCAAAATCTCCAATGTGGAGTCCAAATTTGCTAGTGCCATATCAGAAGTTGGGGAGATTAAGGTAGAAGGGCAGGTCAAGGATGGAGTTCCTCATTTGACGAAGGTAGGATCTTTTGAAGTGGATGTGAGCTTGGAAGGTAATATCATACTGTGCAGACAGGTTGATCAGCCTGGTATGATCGGAAGAGTTGGTAGCATTCTAGGAGAGGAGAATGTAAACGTGAGTTTTATGAGTGTCGGAAGGATTGCTCCTAGGAAGCAAGCTGTTATGGCGATTGGAGTTGATGATCTGCCGAGCAAAGAGTCCTTGAAGAGGATTGGAGAAGTTCCTGCTATTGAAGAGTTTGTTTTCCTCAAGCTGTAG 1797 47.97 MAATPSSTLRASSLRNSSLSLSSKLPLPPAFSVTLRSRRRSSQQLVFVVSASADSKPTVLVAEKLGEAGLDLLKEFANVDCAYNLSPEELKTKISLCDALIVRSGTKVNREVFESSGGRLKVVGRAGVGIDNVDLGAATEHGCLVVNAPTANTVAAAEHGIALLTAMARNVAQADASVKAGKWLRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAAGVELVSFDEAIATADFISLHMPLTPATNKILNDESFAKMKKGVRIVNVARGGVIDEEALVRALDAGIVAQAALDVFTVEPPSTESKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALKGELASTAVNAPMVPAEVLSELKPYVELAEKLGRLAVQLVAGGSGVKNVKVSYSSSRAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRIIEERILQDGSPESPLESIQVKISNVESKFASAISEVGEIKVEGQVKDGVPHLTKVGSFEVDVSLEGNIILCRQVDQPGMIGRVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDDLPSKESLKRIGEVPAIEEFVFLKL 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7051523 7054808 - Conep10aG0104400.1 Cone10ag1017 446815

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1017 598 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 246 268 IPR029753 -
Cone10ag1017 598 SUPERFAMILY ACT-like 516 594 IPR045865 -
Cone10ag1017 598 Pfam ACT domain 526 587 IPR002912 -
Cone10ag1017 598 CDD PGDH_4 59 361 - -
Cone10ag1017 598 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 56 185 - -
Cone10ag1017 598 FunFam D-3-phosphoglycerate dehydrogenase, chloroplastic 525 598 - -
Cone10ag1017 598 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 198 225 IPR029752 -
Cone10ag1017 598 Gene3D - 152 334 - -
Cone10ag1017 598 Gene3D - 61 361 - -
Cone10ag1017 598 ProSiteProfiles ACT domain profile. 526 598 IPR002912 -
Cone10ag1017 598 NCBIfam phosphoglycerate dehydrogenase 59 597 IPR006236 GO:0004617(InterPro)|GO:0006564(InterPro)
Cone10ag1017 598 SUPERFAMILY Serine metabolism enzymes domain 374 520 IPR029009 -
Cone10ag1017 598 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 379 493 IPR045626 -
Cone10ag1017 598 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 161 336 IPR006140 GO:0051287(InterPro)
Cone10ag1017 598 Gene3D - 525 598 - -
Cone10ag1017 598 FunFam D-3-phosphoglycerate dehydrogenase 152 334 - -
Cone10ag1017 598 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 337 IPR036291 -
Cone10ag1017 598 FunFam D-3-phosphoglycerate dehydrogenase 373 524 - -
Cone10ag1017 598 CDD ACT_3PGDH-xct 527 598 - -
Cone10ag1017 598 FunFam D-3-phosphoglycerate dehydrogenase 2 chloroplastic 337 368 - -
Cone10ag1017 598 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 59 368 IPR006139 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone10ag1017 598 PANTHER FORMATE DEHYDROGENASE 1 54 369 - GO:0004617(PANTHER)|GO:0009570(PANTHER)
Cone10ag1017 598 SMART AdoHcyase_NAD_2 186 340 IPR015878 -
Cone10ag1017 598 Gene3D - 372 524 IPR029009 -
Cone10ag1017 598 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 275 291 IPR029753 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1017 K00058 - - csv:101221689 963.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1017 Cone-Chr10:7051523 Cone7ag0821 Cone-Chr7:6126942 2.82E-298 dispersed
Cone4ag1202 Cone-Chr4:10104298 Cone10ag1017 Cone-Chr10:7051523 4.55E-27 transposed
Cone10ag1017 Cone-Chr10:7051523 Cone3ag0997 Cone-Chr3:28776926 0 wgd
Cone10ag1017 Cone-Chr10:7051523 Cone4ag1598 Cone-Chr4:12179712 0 wgd
Cone10ag1017 Cone-Chr10:7051523 Cone8ag1109 Cone-Chr8:9870794 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g717 Blo01g01516 . Bda01g00578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1109 Cone3ag0997 Cone10ag1017 . . . . Blo17g00896 . . . . Bpe05g00377 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001181 3 2 4 3 3 1 4 2 2 2 2 2 3 2 2 4 2 6 4 2 2 2 3 2 2 2 2 3 2 3 78