Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1026 ATGGCTGATGCTAATCGCAGTGATATTTCTACAGCACAAGTGTGTTGTCAGACAGAAAAATGCAAAACTCCTGCACAAAATCTGAAACCATCAATAAATGATCTTGGCTACAAAAATCTGACTACACTATCAGAGGGGAAATATAATCATGGTTGTGAAGGGGTGAACAACACCTGTGTTGATGAACATGTGCAATCATGGCCTGGGGATGAAACAAAGGATTCTCTTGCTACACAGTTCAGCCCATGCTCTGAAGTTAGAAATAATCAAAGCAGGGATAGTTCAGACCTTCATCACAATTTCTCAGAAGAGAAGCATAAATCTGGTTCTGATAATGTAAATGGAAACCTCTCACAACAAGCACAAAATGAGCCAGTAAAAAGTGGCACATTAGTGCCAAGCCGTCTTGATAAAAAACAGTTTCTATTATTTTCTGAAACTGGGGTTAACGAGTCTTTGGCTCAAGTACTGGAACAAACACATGATTCATTGGAACAAGAGCCTAACTACAGCTCTGAAATTGAACACAATCAGCAAACTGAAACCAGCAGTGTGGTGTCCAACTGCTGTATTGATAAACGATTGCAATCGGTTCCTGAAAACATGACTGCACAATTCAGTCGTGAAGAGTCAGGACTACCTTATGAAGATCCGAGCAAGATTAGCCAGCTTGGTTCTGATGATGCTAAACTTGCACCAAATTATCCAAATGAAGCAAAAAATTTAGTATCCGATGATATTGCTCTAAAAGTTGGGCCACCTTTTGAACTTGGGGCAGATTGTTCACGGACTATGCACTTGACGCGCTTGAGAGCAACGAAGAGGTCTAATAAACAATTGGAACCACCCTCTAAAGATGTGCCCCTGAATTCTAGTATTGAAAAGTCCGGAATACAGCCTAAAAAAGCAGTTAAGAAATCTCAAAGCTTTCCCAAAAAAGCAATCGAGAAATTAGCCAAGAGTTCTATGAAGAAAAAATATTTGTTGAGATCTGAAGTAGGGAACCACAGACATCTGCATTCAAGGACAGATGAGAAAGTCAAAGCTCCAGAACCCAGTAATATTGTTCAAAATGTTAGTAGGAAAGGAAAAAAAGGTAAGAAGAAGATAGATGAGAAGGGAAAAAACTCTGATGAATTTTCGAAAATCAGAAGACATTTGAGATATTTACTGAACCGAATGGGATATGAACAGAACTTTATTAATGCTTATTCTGCTGAAGGCTGGAAAGGACAAAGTGCAGAGAAATTAAAGCCTGAAAAAGAGCTTCAACGGGCCACTAGTGAAATATTGCGACGGAAATTAAAAGTTAGAGAGCTATTTCAGTGCCTTGATTCAATATGCAGTGAAGGAAGGCTTCCTGAATCTGTCTTTGATTCTGAAGGAGAAATTGATAGTGAGGATATATTTTGTGCAAAATGTGGTACCAAAGAATTGTCAACTGATAATGACATTATACTCTGTGATGGTGCTTGTGACCGTGCATTCCACCAGCTTTGTTTACAACCACCATTGCTAAATGAAGACGTTCCACCTGATGATGAAGGATGGTTATGCCCGGCTTGTGATTGCAAAGTTGATTGCATGGATCTGCTTAATGACTATCAAGGAACAAATCTCTTAGTTACTGACAGTTGGGTGAAGGTCTATTCTGAGGCAGCTTCTAGTCAAAATCAGAACGGCACATCAGGTCTTCCTTCAGATGATTCTGAAGATAGTGATTATGATCCTGATGGCCCCCAATTTGATAGTCCCGAAAAAGAAGCAAGTTCTGATGAATCTGACTATGCATCTGCAGCTGAGGAATTGGAGACACCCCAACCTAAGGCTGACCTGTCCTCATGTCTTCCTTCTGACGACTCTGAGGATGATAACTATGATCCTAGTGCTCCTGACCTTGATGATGGTGTTAAACAGGAAAGTTCAAGTTCTGATTTTACGTCCGACTCAGAGGATCTTGCTGGCGTGATTGATGATAATGGGTCTTCTAGAAACAATGATGGCTCCAATGGGCGAGGCCGTAAGAGTGGTAGAAAGATAGGTTTATTAGCTGATGAGTTGCTATCCATATTGGACTCAGGCCCTGGGCTAGATGGTTCTTTGCTGGTTTCTGGGAAAAGGCATGTGGAATGGTTTGACTATAAGAAGCTTCATGATAGAAGTTCCAGAAAAGTTGCTCGAGTGTCACAAAACAGAAATGGAGCCAACGTGCAGGGGACAAAGCATGACTTAAAGGAGATTGAACAGGGTCCTACTAGAAGAACTCGCCAAAAGCCTACCATTGAAGATACTAATGACTCTATGATTAAATCACCTGAAGACCCTTCTAAGTCTCGCTCTACTGGTAAAGGGACAAAATCAGCTGGTAGTAGAGGGCTTGGGGACACTGTAATACAGAAACTCTATGCATCATTCAATGAAAATCGGTACCCTGACCGAGCTAAGAAAGAAAGCTTAGCACAAGATATAGGAATCACATTTAAGCAGGTTCATAAATGGTTTCTAAACACTCGGTGGAGCACGCGGCACTCACCTGCTGCAAAAGCAAAGATAGGTGAAAGTGCTGCTACTGCAAAGGAGACTCCTACTCCTCAGAAATCCATTAGACATGAATCTTCTACTCCAACAAGATCCAGAAAGAGAAAGGGTGTCTCAGATTCTGATGCTCGAGTTGAAGAAACACCAAAATCTGAATTGAAAACAAGCTATAGAGTCCAGACAAGAAGAAGAAAATCGGCCTCTTGA 2745 40.98 MADANRSDISTAQVCCQTEKCKTPAQNLKPSINDLGYKNLTTLSEGKYNHGCEGVNNTCVDEHVQSWPGDETKDSLATQFSPCSEVRNNQSRDSSDLHHNFSEEKHKSGSDNVNGNLSQQAQNEPVKSGTLVPSRLDKKQFLLFSETGVNESLAQVLEQTHDSLEQEPNYSSEIEHNQQTETSSVVSNCCIDKRLQSVPENMTAQFSREESGLPYEDPSKISQLGSDDAKLAPNYPNEAKNLVSDDIALKVGPPFELGADCSRTMHLTRLRATKRSNKQLEPPSKDVPLNSSIEKSGIQPKKAVKKSQSFPKKAIEKLAKSSMKKKYLLRSEVGNHRHLHSRTDEKVKAPEPSNIVQNVSRKGKKGKKKIDEKGKNSDEFSKIRRHLRYLLNRMGYEQNFINAYSAEGWKGQSAEKLKPEKELQRATSEILRRKLKVRELFQCLDSICSEGRLPESVFDSEGEIDSEDIFCAKCGTKELSTDNDIILCDGACDRAFHQLCLQPPLLNEDVPPDDEGWLCPACDCKVDCMDLLNDYQGTNLLVTDSWVKVYSEAASSQNQNGTSGLPSDDSEDSDYDPDGPQFDSPEKEASSDESDYASAAEELETPQPKADLSSCLPSDDSEDDNYDPSAPDLDDGVKQESSSSDFTSDSEDLAGVIDDNGSSRNNDGSNGRGRKSGRKIGLLADELLSILDSGPGLDGSLLVSGKRHVEWFDYKKLHDRSSRKVARVSQNRNGANVQGTKHDLKEIEQGPTRRTRQKPTIEDTNDSMIKSPEDPSKSRSTGKGTKSAGSRGLGDTVIQKLYASFNENRYPDRAKKESLAQDIGITFKQVHKWFLNTRWSTRHSPAAKAKIGESAATAKETPTPQKSIRHESSTPTRSRKRKGVSDSDARVEETPKSELKTSYRVQTRRRKSAS 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7151963 7160545 - Conep10aG0105300.1 Cone10ag1026 446824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1026 914 MobiDBLite consensus disorder prediction 739 780 - -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 554 568 - -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 91 110 - -
Cone10ag1026 914 SMART PHD_3 470 523 IPR001965 -
Cone10ag1026 914 SUPERFAMILY Homeodomain-like 795 843 IPR009057 -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 204 229 - -
Cone10ag1026 914 SUPERFAMILY FYVE/PHD zinc finger 460 529 IPR011011 -
Cone10ag1026 914 CDD homeodomain 795 844 IPR001356 GO:0003677(InterPro)
Cone10ag1026 914 ProSiteProfiles 'Homeobox' domain profile. 798 844 IPR001356 GO:0003677(InterPro)
Cone10ag1026 914 MobiDBLite consensus disorder prediction 722 792 - -
Cone10ag1026 914 Gene3D - 795 849 - -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 85 132 - -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 111 129 - -
Cone10ag1026 914 Pfam Homeodomain 797 839 IPR001356 GO:0003677(InterPro)
Cone10ag1026 914 MobiDBLite consensus disorder prediction 554 678 - -
Cone10ag1026 914 FunFam Homeobox protein HAT3.1 451 529 - -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 872 905 - -
Cone10ag1026 914 CDD PHD_PRHA_like 470 522 IPR045876 -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 160 185 - -
Cone10ag1026 914 Pfam PHD-finger 471 522 IPR019787 -
Cone10ag1026 914 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 149 894 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Cone10ag1026 914 ProSiteProfiles Zinc finger PHD-type profile. 468 525 IPR019787 -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 580 594 - -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 636 650 - -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 273 310 - -
Cone10ag1026 914 SMART HOX_1 787 848 IPR001356 GO:0003677(InterPro)
Cone10ag1026 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 527 IPR013083 -
Cone10ag1026 914 ProSitePatterns Zinc finger PHD-type signature. 471 522 IPR019786 -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 283 297 - -
Cone10ag1026 914 MobiDBLite consensus disorder prediction 842 914 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1026 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1026 Cone-Chr10:7151963 Cone11ag0201 Cone-Chr11:1004832 2.18E-50 dispersed
Cone10ag1026 Cone-Chr10:7151963 Cone3ag1009 Cone-Chr3:28893546 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g656 Blo02g00944 Blo03g00085 Bda06g01216 Bda08g00666 Bpe07g00262 . Bma05g00672 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1009 Cone10ag1026 . . . . . . . . . Bpe05g00488 . . . Cmo04g00496 Cmo16g00355 . . . . Cpe14g00278 Cpe01g00416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003741 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44233 PF05755 REF 2.70E-45 No_clan Cone TF