Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1033 ATGGCGATGAAGTCGTGTTACAGACCATTAGAGAGGTTCTTAGGTCGAAGAGGTAGTAGCTCTAATGGCGATGGGCTTTTATGGCACACGGAATTGAAGCCTCATGCATCTGGAGATTACTCGATCGCTGTGGTTCAAGCCAATTCGAGCCTTGAAGATCAGAGTCAAGTTTTTACGTCCCCCTCTGTTTCCTATTTTGGTGTCTATGATGGCCATGGCGGCCCTGAAGCTTCTCGCTTTGTTAACAGGTTTCTCCTTAATTATTTGCACAAATTTACTACAGAACAAGGGGGATTGTCAGCCGATGTAATAAAGAAAGCTTTTGATGCAACCGAGGAAGAATTCTCCAACTTGGCAAAACGGGCAATGACAGCCAGGCCACAAATCGCTTCAGTAGGGTCATGCTGTCTTGTGGGTGCAATCTCAAATGATAATAAGTTGTACGTCGCAAATCTGGGGGACTCAAGAGCGGTTCTTGGCCGGAGAGCCGGTTCTTCATCAGAGAGGAAGAAAGGGGTTGTTGTGGCAGAGCGGTTATCAACTGATCATAATGTGGCGGTTGAGGAAGTTAGGAAAGAAGTCGAAGCTCTTCATCCTGATGATTCTCACATCGTGGTCTATAATCGTGGGGTCTGGAGGATCAAGGGCATCATTCAGGTATCCAGATCTATAGGGGATGTTTATCTGAAGGAACCCGAAGTTAGCCGGGATGCTATTTTCCAACAATTTGGATTCCCTATTCCTTTGAAACGGGCAGTGATAACATCAGAACCATCGATTCTATTCAGAAAACTTGTGCCACAAGACATGTTCCTAATATTCGCATCAGACGGCCTTTGGGAACAATTAACCGATCAAGCTGCTGTTAATATTGTTTCCAACAACCCAAGAGCGGGGATTGCGAGGAGATTGGTGAGGGCTGCACTTGAAGAGGCAGCGAGGAAGAGAGAGATGAGATATGATGAGATGAAGAAAATCGAAAAGGGAAGGAGACGACATTTCCACGATGACATCACCGTTATTGTCGTCTATCTTGATCATCATCGCACTAGCTCTAGGTCCTCCTCCTCGCCCGGTAGAGTTGGCGGCAATCAAATTGGCAGCACTAGCTCGCCTTCTGACATTTTCTCCCTAAGTGCTGATGACAATGAGGACGATCTTCTTAATGATCTCTTAATACAGACATGA 1188 45.96 MAMKSCYRPLERFLGRRGSSSNGDGLLWHTELKPHASGDYSIAVVQANSSLEDQSQVFTSPSVSYFGVYDGHGGPEASRFVNRFLLNYLHKFTTEQGGLSADVIKKAFDATEEEFSNLAKRAMTARPQIASVGSCCLVGAISNDNKLYVANLGDSRAVLGRRAGSSSERKKGVVVAERLSTDHNVAVEEVRKEVEALHPDDSHIVVYNRGVWRIKGIIQVSRSIGDVYLKEPEVSRDAIFQQFGFPIPLKRAVITSEPSILFRKLVPQDMFLIFASDGLWEQLTDQAAVNIVSNNPRAGIARRLVRAALEEAARKREMRYDEMKKIEKGRRRHFHDDITVIVVYLDHHRTSSRSSSSPGRVGGNQIGSTSSPSDIFSLSADDNEDDLLNDLLIQT 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7202376 7205362 - Conep10aG0106000.1 Cone10ag1033 446831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1033 395 SMART PP2C_4 29 343 IPR001932 -
Cone10ag1033 395 MobiDBLite consensus disorder prediction 350 378 - -
Cone10ag1033 395 PANTHER PROTEIN PHOSPHATASE 33 344 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone10ag1033 395 Pfam Protein phosphatase 2C 60 314 IPR001932 -
Cone10ag1033 395 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
Cone10ag1033 395 SUPERFAMILY PP2C-like 45 347 IPR036457 -
Cone10ag1033 395 FunFam Probable protein phosphatase 2C 42 30 353 - -
Cone10ag1033 395 ProSiteProfiles PPM-type phosphatase domain profile. 39 345 IPR001932 -
Cone10ag1033 395 MobiDBLite consensus disorder prediction 350 381 - -
Cone10ag1033 395 CDD PP2Cc 46 345 IPR001932 -
Cone10ag1033 395 Gene3D - 29 355 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1033 Cone-Chr10:7202376 Cone8ag1300 Cone-Chr8:10628497 1.85E-124 dispersed
Cone10ag1033 Cone-Chr10:7202376 Cone12ag1055 Cone-Chr12:8757750 5.23E-184 wgd
Cone10ag1033 Cone-Chr10:7202376 Cone3ag1016 Cone-Chr3:28992709 2.24E-254 wgd
Cone10ag1033 Cone-Chr10:7202376 Cone8ag1089 Cone-Chr8:9794240 1.16E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1033 - - - 0.0