Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1041 ATGGAATCAATTGGGTTCGTTTCGGATGGAGAATGGAGCTCTCTTAGTGGCACTTGCTCTTCTGAGGAGGCTGATTTCATGGCTCAGTTACTCAACAGTTGCTCCGTCCTGAACGAACTTAACGAAAGTTCAAGCTTAGCAATCCCTTTTACTTATAATTGGCCCGATCAAGAGTCCGCATTAATTAACATGAATTACATTCCTCATGGCATTGGCTATAATGAGGGTGATCTGTTTCTCCCTTGTGATGTTAATGGAAACCACCATTTCAACGATTCTTCGCAACTTTTACTGTCTATGAATGGGTCAGGGTTGACGGATTTCGTTATGGAAGATGTGAGAAATATCACCTCACTTCATGTTGAAGGAGAAAATAATTATTGCTTGAGCCAAGAGACAAGTGAAGAAGATTATTCTCTAAAGAAAAAGGAGCTACTGAGGGAATCCGAGATGAGGCCATGTGAACTACTTGCCATTGACAACAAAAACAACCCGAATGTGAATTCGAAGAAAAGATTCTGGAATTCGGAAAATATCCAAAAGGTTAAGAAGAGTGTGAGACTGAAGAAGAATGAGAAGTCGGGTTCAATTAGTAACGATGAAGAAGAGGGTATTATTGGAAGCCCGAATGGGCAGAGCACAAGCGGTTGTAGCTGGGAAGATGGCTTGAATTTGTCTCAAGAGAACAATAATAATGGAGGGGTTAGTTCAAGCTTGAGTCCGAAGGGGCCTGTGGCTCTCAACTTGAACGGAAAAACACGAGCTAATAGAGGGTCGGCCACGGATCCACAAAGCCTCTATGCTAGAAAGAGAAGAGAGAGGATCAATGAGAGATTGAGGATTCTACAAAACCTTGTCCCTAATGGAACAAAGGTTGATATCAGCACTATGCTTGAGGAAGCCGTTAAATATGTGAAATTCTTACAACTTCAAATTAAGTTGCTAAGCTCAGATGATCTCTGGATCTATGCTCCACTTGCTTACAATGGGATGGACATTGGACTTGATATGAAGCTCATCGCACCAAGAGAATAA 1035 41.74 MESIGFVSDGEWSSLSGTCSSEEADFMAQLLNSCSVLNELNESSSLAIPFTYNWPDQESALINMNYIPHGIGYNEGDLFLPCDVNGNHHFNDSSQLLLSMNGSGLTDFVMEDVRNITSLHVEGENNYCLSQETSEEDYSLKKKELLRESEMRPCELLAIDNKNNPNVNSKKRFWNSENIQKVKKSVRLKKNEKSGSISNDEEEGIIGSPNGQSTSGCSWEDGLNLSQENNNNGGVSSSLSPKGPVALNLNGKTRANRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVKYVKFLQLQIKLLSSDDLWIYAPLAYNGMDIGLDMKLIAPRE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7267596 7269035 + Conep10aG0106800.1 Cone10ag1041 446839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1041 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 258 321 IPR036638 GO:0046983(InterPro)
Cone10ag1041 344 SMART finulus 265 314 IPR011598 GO:0046983(InterPro)
Cone10ag1041 344 FunFam Basic helix-loop-helix transcription factor 260 317 - -
Cone10ag1041 344 MobiDBLite consensus disorder prediction 201 244 - -
Cone10ag1041 344 CDD bHLH_AtIND_like 260 322 - -
Cone10ag1041 344 MobiDBLite consensus disorder prediction 184 199 - -
Cone10ag1041 344 Pfam Helix-loop-helix DNA-binding domain 269 309 IPR011598 GO:0046983(InterPro)
Cone10ag1041 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 308 IPR011598 GO:0046983(InterPro)
Cone10ag1041 344 Gene3D - 261 317 IPR036638 GO:0046983(InterPro)
Cone10ag1041 344 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 111 328 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone10ag1041 344 MobiDBLite consensus disorder prediction 184 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1041 Cone-Chr10:7267596 Cone16ag0535 Cone-Chr16:7353606 2.53E-20 dispersed
Cone9ag0512 Cone-Chr9:2454901 Cone10ag1041 Cone-Chr10:7267596 5.71E-09 dispersed
Cone10ag1041 Cone-Chr10:7267596 Cone12ag1048 Cone-Chr12:8728788 2.65E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44234 PF01267 F-actin_cap_A 3.50E-13 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1041 - - - 0.0