Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1068 ATGGTGAGGAAAACCAAAGGTCGTCAAAAGGTCGAGATGGTGAAAATGCCAAATGAGAGCAACCTTCAAGTAACATTCTCAAAAAGACGAGCTGGGCTTTTCAAGAAAGCTAGTGAGCTTGCAACCTTATGTGGGGCCGAGATAGGCCTAATTGTTTTTTCACCGGGCCGGAAAGTCTTCTCTTTCGGGCACCCGTGTGTTGAGACACTCATTGAGCGTTTTTTGAGCCGAAGCTCAGGTCCACAAGACCCAAATGACGGAACCATGCAACTCATTGAAGCTCATAGAAATGCAAATCTTAGAGAGCTCAATGCAGAATTGACTCAAGTGATGAACGAGCTAGAGGCTGAGAAGAAGAGGGGAGAAGAGTTGGCTCGGCACATGAAGGCGAGCCAGAGCCAGTGTTGGTGGGAGAATCCGACTGATGAGCTTGATTACGCTCAGCTTGAGCAGCTTAAGGCTTCACTCGAAGAGCTGAAGAGGAATGTGACAAAGCAGGCTGATAAGGCTATGTCCCAAAGCACTACTTCAAACCTTAATATCCCCTGTCTTGAGTTTTTTCGAGGAGGTAGTAGTTCAAGTAATCCTCAAGGGTTTATGAACCATGATAGTAATAATTTTATTCATGACATGTCAATGAATCATTTTGGTGGGTTTAATGGAGATCTGATGAACATGAACATGTCTATGTCTATGCCTATGCCTTTTGATCTTCCTTTTCCTTCTCCTCCTCTTCCTCTTCGTGTTCCTCCTCCACCTCTTCCACATAATACATTCAATCACGGATACAATGGACGCGGATATCTATAA 810 44.57 MVRKTKGRQKVEMVKMPNESNLQVTFSKRRAGLFKKASELATLCGAEIGLIVFSPGRKVFSFGHPCVETLIERFLSRSSGPQDPNDGTMQLIEAHRNANLRELNAELTQVMNELEAEKKRGEELARHMKASQSQCWWENPTDELDYAQLEQLKASLEELKRNVTKQADKAMSQSTTSNLNIPCLEFFRGGSSSSNPQGFMNHDSNNFIHDMSMNHFGGFNGDLMNMNMSMSMPMPFDLPFPSPPLPLRVPPPPLPHNTFNHGYNGRGYL 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7417970 7418779 + Conep10aG0109500.1 Cone10ag1068 446866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1068 269 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 PANTHER MADS BOX PROTEIN 7 160 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone10ag1068 269 Coils Coil 146 173 - -
Cone10ag1068 269 CDD MADS_MEF2_like 7 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone10ag1068 269 Gene3D - 87 180 - -
Cone10ag1068 269 SMART madsneu2 6 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 FunFam Agamous-like MADS-box protein AGL62 18 83 - -
Cone10ag1068 269 SUPERFAMILY SRF-like 7 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 Gene3D - 18 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 Coils Coil 97 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1068 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1068 Cone-Chr10:7417970 Cone3ag1051 Cone-Chr3:29259270 1.94E-62 dispersed
Cone10ag1067 Cone-Chr10:7414742 Cone10ag1068 Cone-Chr10:7417970 6.43E-126 tandem
Cone10ag1068 Cone-Chr10:7417970 Cone10ag1069 Cone-Chr10:7425171 1.33E-120 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44236 PF00025 Arf 2.30E-64 CL0023 Cone TF