Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1068 ATGGTGAGGAAAACCAAAGGTCGTCAAAAGGTCGAGATGGTGAAAATGCCAAATGAGAGCAACCTTCAAGTAACATTCTCAAAAAGACGAGCTGGGCTTTTCAAGAAAGCTAGTGAGCTTGCAACCTTATGTGGGGCCGAGATAGGCCTAATTGTTTTTTCACCGGGCCGGAAAGTCTTCTCTTTCGGGCACCCGTGTGTTGAGACACTCATTGAGCGTTTTTTGAGCCGAAGCTCAGGTCCACAAGACCCAAATGACGGAACCATGCAACTCATTGAAGCTCATAGAAATGCAAATCTTAGAGAGCTCAATGCAGAATTGACTCAAGTGATGAACGAGCTAGAGGCTGAGAAGAAGAGGGGAGAAGAGTTGGCTCGGCACATGAAGGCGAGCCAGAGCCAGTGTTGGTGGGAGAATCCGACTGATGAGCTTGATTACGCTCAGCTTGAGCAGCTTAAGGCTTCACTCGAAGAGCTGAAGAGGAATGTGACAAAGCAGGCTGATAAGGCTATGTCCCAAAGCACTACTTCAAACCTTAATATCCCCTGTCTTGAGTTTTTTCGAGGAGGTAGTAGTTCAAGTAATCCTCAAGGGTTTATGAACCATGATAGTAATAATTTTATTCATGACATGTCAATGAATCATTTTGGTGGGTTTAATGGAGATCTGATGAACATGAACATGTCTATGTCTATGCCTATGCCTTTTGATCTTCCTTTTCCTTCTCCTCCTCTTCCTCTTCGTGTTCCTCCTCCACCTCTTCCACATAATACATTCAATCACGGATACAATGGACGCGGATATCTATAA 810 44.57 MVRKTKGRQKVEMVKMPNESNLQVTFSKRRAGLFKKASELATLCGAEIGLIVFSPGRKVFSFGHPCVETLIERFLSRSSGPQDPNDGTMQLIEAHRNANLRELNAELTQVMNELEAEKKRGEELARHMKASQSQCWWENPTDELDYAQLEQLKASLEELKRNVTKQADKAMSQSTTSNLNIPCLEFFRGGSSSSNPQGFMNHDSNNFIHDMSMNHFGGFNGDLMNMNMSMSMPMPFDLPFPSPPLPLRVPPPPLPHNTFNHGYNGRGYL 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7417970 7418779 + Conep10aG0109500.1 Cone10ag1068 446866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1068 269 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 PANTHER MADS BOX PROTEIN 7 160 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone10ag1068 269 Coils Coil 146 173 - -
Cone10ag1068 269 CDD MADS_MEF2_like 7 80 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone10ag1068 269 Gene3D - 87 180 - -
Cone10ag1068 269 SMART madsneu2 6 65 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 FunFam Agamous-like MADS-box protein AGL62 18 83 - -
Cone10ag1068 269 SUPERFAMILY SRF-like 7 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 Gene3D - 18 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1068 269 Coils Coil 97 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1068 Cone-Chr10:7417970 Cone3ag1051 Cone-Chr3:29259270 1.94E-62 dispersed
Cone10ag1067 Cone-Chr10:7414742 Cone10ag1068 Cone-Chr10:7417970 6.43E-126 tandem
Cone10ag1068 Cone-Chr10:7417970 Cone10ag1069 Cone-Chr10:7425171 1.33E-120 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44236 PF00025 Arf 2.30E-64 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1068 - - - 0.0