Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1081 ATGGAGAACGCCTACTCCTACAATTCCTACCCTGAATCCGGCGGCTCCTCTCCTCGCTCCCGCGAAATCGACTTCGAGAATCCTCCTCCGCCTTGGGACGAGAACTACAAGGTCAAATTCATGTGCAGCTATGGTGGCAAGATCCAGCCTCGCCCTCACGACAACCACCTCTCCTACGTCGACGGAGACACCAAGATCCTCGCTGTCGATCGGAGCATCAAGTTCAACTCCTTGGTGGCGAAGCTCTCTTCTCTCTGTGACGCCGAATTTATCACCTTCAAGTACCAGTTACCAGGCGAAGATCTCGACGCTTTGATTTCCGTAGCTAATGATGATGATCTCGAACACATGATGAACGAATACGATCGGCTTTATCGTGCTACCGCTAAGTCTGCCCGCATGAGACTGTTCCTCTTCCCTGGTAATCTAAACCGGGCTTTCGGATCTCAAGGAAGCAGTAGTTCGGAGCGGGAGAGGACGTTCGTCGAAGCTATTAATTATGGTCCGAGTGAACCAGTTCAGAACGCTGCTGATTTTCTACAGCCTCATCCTGTTCAGAACGCTGCTGATTTTCTACATCCTCACACGACTCCTTTGGCGGAGAAACTACGCGATCCGGTTTCTGAACCGGCAGTTCCTTCTCCTGACTATACTCTCAGAACGGGTTACGGACTTCGGGTCGTCGGGCCGGATCAGGTTATGATGCCGATTCAGAGACAGTTACAGGAACTGCAGAGGTTACGAATTAACGAGCATGAACAGTCGATGTATAGAAGGAAGAGCGATGAGATTCAAGCCGGATGTTACGCCGGAGATTATTATGTGCATAAACTGCCGGAGAAAGTATCGCCCTCGGCGCATGTACCGGTGTCTGTGCCTTCAACGGTGACTGCTCCGGTTGGATACTGGCCTGAACAAAAAATTGTTTCAAGCGTCGCAGGTTTTCCGGCCCCCGTGACGGCAACACCTGGATTACCAGAACAACCACTCTACATGATTCCACCTCCGATTGTTCGACCGGCGACCGGACCAACAGGTCAAGGATACTATACTGTCCAGCGAATGAACTCTGATGTTTACCGGGAGCAGCCGGTGCCGGTGGTGCACACTTCAACACCACCTCAACAACAACCTCCGTTATCTGCGGCACCGCCGCCACAAACTATGCCGTTTCAGCGGCCCAGAGTTGCGGCATATCCCGACGCATCAGCTGTTGTGCGGCAGAGTGGTGGTGGTATAGGCACGGTGGCGATGGCGTACGATAGCAACCCCGGGAGGCAGGTGTACTATACTGCGCCTGGAGGAGCAGTAGTTGTGCCGCCACAATATCATGGCGTTGCGGCCCCGGTTGTCGGTGGTGGTGCTGTGGGCCCCCAGCAGCATGATAGTAAGCTTGTCGCAAAGCTCTCGCCAGGTTCAATGTGA 1425 53.47 MENAYSYNSYPESGGSSPRSREIDFENPPPPWDENYKVKFMCSYGGKIQPRPHDNHLSYVDGDTKILAVDRSIKFNSLVAKLSSLCDAEFITFKYQLPGEDLDALISVANDDDLEHMMNEYDRLYRATAKSARMRLFLFPGNLNRAFGSQGSSSSERERTFVEAINYGPSEPVQNAADFLQPHPVQNAADFLHPHTTPLAEKLRDPVSEPAVPSPDYTLRTGYGLRVVGPDQVMMPIQRQLQELQRLRINEHEQSMYRRKSDEIQAGCYAGDYYVHKLPEKVSPSAHVPVSVPSTVTAPVGYWPEQKIVSSVAGFPAPVTATPGLPEQPLYMIPPPIVRPATGPTGQGYYTVQRMNSDVYREQPVPVVHTSTPPQQQPPLSAAPPPQTMPFQRPRVAAYPDASAVVRQSGGGIGTVAMAYDSNPGRQVYYTAPGGAVVVPPQYHGVAAPVVGGGAVGPQQHDSKLVAKLSPGSM 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7501998 7503540 + Conep10aG0110800.1 Cone10ag1081 446879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1081 474 Pfam PB1 domain 56 140 IPR000270 GO:0005515(InterPro)
Cone10ag1081 474 Gene3D - 58 140 - -
Cone10ag1081 474 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 57 141 - -
Cone10ag1081 474 CDD PB1_UP2 41 139 - -
Cone10ag1081 474 MobiDBLite consensus disorder prediction 1 16 - -
Cone10ag1081 474 SUPERFAMILY CAD & PB1 domains 53 146 - -
Cone10ag1081 474 PANTHER OS05G0427100 PROTEIN-RELATED 5 377 IPR053198 -
Cone10ag1081 474 MobiDBLite consensus disorder prediction 1 28 - -
Cone10ag1081 474 SMART PB1_new 52 141 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1081 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1081 Cone-Chr10:7501998 Cone4ag1278 Cone-Chr4:10507725 2.89E-76 dispersed
Cone10ag1081 Cone-Chr10:7501998 Cone12ag1011 Cone-Chr12:8540219 8.31E-125 wgd
Cone10ag1081 Cone-Chr10:7501998 Cone3ag1068 Cone-Chr3:29353861 3.52E-262 wgd
Cone10ag1081 Cone-Chr10:7501998 Cone8ag1038 Cone-Chr8:9577075 1.38E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1011 Cone8ag1038 Cone3ag1068 Cone10ag1081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029775 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2