Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1087 ATGGGAAGAGGGAAGATCGTGATAAGGAGGATTGATAATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGGAGAAATGGGTTGCTGAAGAAGGCTAAAGAGCTTTCAATCCTTTGTGATGCTGAAGTTGGATTGATCATCTTCTCTAGTACTGGCAAGCTCTATGACTATTCAAGCTCAAGCATGAAATCAGTAATTGATAGATACAACAAGGTGAAAGAGGAAAATCGTCAACTACTGGTCAACACTGCCTCTGAAATCAAGTTTTGGCAAAGTGAAGCAGAAAGCTTGGGGCAGCAACTGCAGTACTTACAAGAATGCAACAGGCACCTGATGGGTGAAGAGCTTTCTGGTTTGAGCATTAGACACTTGCAGAGTCTGGAAAGCCAGTTGGAGATGGGCCTAAAGAACGTCCGTTTGAGAAAGGACCAAGTTTTTGTTGAAGAGATACAAGAACTAAACCAAAAGGGAAATCTCATACATCAAGAAAACATGGAATTGTATAAGAAGATAGACCTACTACGAAAAGAGAACGAAGAATTGCAAAAGATATATGGAGCAAAGGATAATAGACTGGATGAGGAAAACAGAAGTTCAGAGCCTTCTTCATGCACTGCCATTGATATATGTCATGACCTCCAAGCACCTATACATCTTCAGCTAAGCCAACCACTTTCTCAAACCAACACAACAACAAAACCAATGAAGCTCGGATTAGCGCTAGCAAACCTCGATTAA 738 41.06 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDYSSSSMKSVIDRYNKVKEENRQLLVNTASEIKFWQSEAESLGQQLQYLQECNRHLMGEELSGLSIRHLQSLESQLEMGLKNVRLRKDQVFVEEIQELNQKGNLIHQENMELYKKIDLLRKENEELQKIYGAKDNRLDEENRSSEPSSCTAIDICHDLQAPIHLQLSQPLSQTNTTTKPMKLGLALANLD 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7536536 7540059 - Conep10aG0111400.1 Cone10ag1087 446885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1087 245 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone10ag1087 245 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone10ag1087 245 Pfam K-box region 84 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone10ag1087 245 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 224 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone10ag1087 245 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cone10ag1087 245 Gene3D - 13 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone10ag1087 245 Coils Coil 164 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1087 Cone-Chr10:7536536 Cone4ag1281 Cone-Chr4:10526697 2.58E-75 dispersed
Cone10ag1087 Cone-Chr10:7536536 Cone3ag1075 Cone-Chr3:29393090 4.77E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44238 PF12899 Glyco_hydro_100 5.90E-216 CL0059 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1087 K09264 - mdm:103436564 307.375