Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1103 ATGAAGATCCGATGCGACATGTGTGACAAAGCAGAGGCCTCTGTTTTCTGCTCGGCAGACGAGGCTGCTCTCTGCGACGCATGCGATCGCCATGTCCACCATGCTAATAAGCTTGCCACCAAGCACAACCGTTTCTCTCTCCTCCACCCTTCTTTCAAAGAAATCCCTCTTTGTGATATCTGTCGGGAGAGGAGGGCCTTGCTCTTCTGTCAAGAAGATAGGGCAATTCTATGTAGAGAGTGTGACATTCCAATTCACAAAGCAAACGAACAAACACAGAAGCATAGTAGGTTTCTTCTCACAGGAGTGAAGCTCTCTTCCACTTCTTCCGTATATCCGACTACAATTAACTCTACAACAACAACAACTTCCTCCTCAAATGGCGGCTCGGAGCCTGCAACCATTATTAATGACAGCAAAACTACTAGAAGCTCCTCTAAAATATCGAATAAGAGACCAAAAACAACAGGAGGCTGCTGTTATAATAGTACTAATAATAATACTAATGGTGGGTTAATGATGTTTAATACACAAATTTTAGCAAGTAGATATAATGAAGAGAGTCGGGTAAGCGATAGCGGATCGTATTCAACGAGTAGCATATCGGAGTATTTGGAGACATTGCCCGGTTGGTGTGTGGAAGACTTTCTCGATCCTTCTTCTTCTTCTACTAATTATGGTCATTTCTCTAATGTTTGGAGCACACAAAATTTGTAG 717 42.82 MKIRCDMCDKAEASVFCSADEAALCDACDRHVHHANKLATKHNRFSLLHPSFKEIPLCDICRERRALLFCQEDRAILCRECDIPIHKANEQTQKHSRFLLTGVKLSSTSSVYPTTINSTTTTTSSSNGGSEPATIINDSKTTRSSSKISNKRPKTTGGCCYNSTNNNTNGGLMMFNTQILASRYNEESRVSDSGSYSTSSISEYLETLPGWCVEDFLDPSSSSTNYGHFSNVWSTQNL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7787512 7788680 - Conep10aG0113200.1 Cone10ag1103 446901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1103 238 Gene3D Classic Zinc Finger 1 98 - -
Cone10ag1103 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 221 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cone10ag1103 238 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270(InterPro)
Cone10ag1103 238 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Cone10ag1103 238 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Cone10ag1103 238 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cone10ag1103 238 FunFam B-box zinc finger protein 21 1 98 - -
Cone10ag1103 238 CDD Bbox1_BBX-like 57 100 IPR049808 -
Cone10ag1103 238 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Cone10ag1103 238 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cone10ag1103 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cone10ag1103 238 MobiDBLite consensus disorder prediction 114 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1103 Cone-Chr10:7787512 Cone20ag0105 Cone-Chr20:463874 2.51E-60 dispersed
Cone10ag1103 Cone-Chr10:7787512 Cone3ag1218 Cone-Chr3:30922973 7.13E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44239 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1103 - - - 0.0