Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1107 ATGGCGGAGCAGAAGAGCGGCGAAAGCGGCTCAATTAACGAAGAGGAAGAAGAAGACAAGAAGAAGAAGGAAAAAAAGAATAAGAATGGGGATCCAGAGCTCTTCAGCTGCTTGCTCCAACCTGTGCGTGATGGTGGTGATCCCGATTACGTCGGAATTCGCCGAATCCTTCTGTATCGGAAAGCTGAGGCCGGAGTTCATCGTCGCAGAGATTGGAGGTGCAATGGAAAAGGTTATGTGGCATATCGTAATTACGTTCGTAGGCCAAGGAATTGGGAAAGCTCTTATTTGCCAAGTCCCCTAAGCACTCCGGGAAACAGTGGGCAATGGATTACACATTCAAGTTCACTCTCCCATTTATATGAGGTGGAAAGTTGGGGTTCTGGGAAGGACGTGCGAAGTAACAATCCAACTTCAAGTCGAAGGACAAGTTTTAGCTCAAATGCGAGTGATCATGATCAACCACATCTTCGTGGGGAGGAACATGCATATTCTTTTGTTGGAATGCATTGTATCTTCGATCAGTGCAGGGCCTCTGTTACGGTTGTGAAGTTTGGCCATATGAGCTCTGATCTACTTGCATATGGGGCATCTGATGGAACCTTGACTGTGTGCAGTGTTTCTGAGCCACCTTCAATCATTAAGACTTTGCTGGGACACTCAAAAGATGTTACAGATTTTGATTTTACATCAAACAATCAATATATTGCATCATCATCCACTGACAAAACTATCAGAGTGTGGGAGATATCAAAAGGGCTTTGTATTAGAGTAATCTACGGAGTTTCTTCGCAATTGTGTATTCGTTTTCATCCTGTAAATAATAACTTCCTCTCAGTTGGCAATGCAAACAGGGAAATTATGGTATTCAATTTCAGCACTGGGAGGATAGTTACTAAAACAGTCTTTGATAGTGAGGTTATGTCTATGGACCATGATCACACTGGTCAACTCATTTTCTGTGGGGATACATTGGGGTATGTATACTCAGTAAGTATGAACTCTCGTACTGGAGCATTATCCCGCTCTCATCGCCATAGAAGTAGCAGTAGGAAATCTCCAGTTACAACGGTGCAGTACAGAAGCTTCTCTCTACTGGCCAGAGGTCCTGTATTGCTAACTTGCACACAAGATGGAAATTTGACTTTCTTCAGTGTTTCTCTTGAAGTACAAGGTTATTTGACTCTTCGTTGCTCGCTGAAATTAACTCCAAGAATATACAGCATCCAGGCTTCCTTCTGTCCTTTGCTTTCCCTTAAGAAAGGAGAATACATAGTTGCTGGAAGCGAAGATACAAATGTCTACTTCTATGATCTAACCCGACCAAAGCATACATGTGTAAACAAGCTTCAGGGTCATCGATTTCCAGTTATAGGTGTCACTTGGAACCATGGAGAGAACTTGTTGGCTTCATCCGATTTATACGGTACGGTGATTGTATGGAAGAGATCAAAGACAAGTTAA 1464 42.9 MAEQKSGESGSINEEEEEDKKKKEKKNKNGDPELFSCLLQPVRDGGDPDYVGIRRILLYRKAEAGVHRRRDWRCNGKGYVAYRNYVRRPRNWESSYLPSPLSTPGNSGQWITHSSSLSHLYEVESWGSGKDVRSNNPTSSRRTSFSSNASDHDQPHLRGEEHAYSFVGMHCIFDQCRASVTVVKFGHMSSDLLAYGASDGTLTVCSVSEPPSIIKTLLGHSKDVTDFDFTSNNQYIASSSTDKTIRVWEISKGLCIRVIYGVSSQLCIRFHPVNNNFLSVGNANREIMVFNFSTGRIVTKTVFDSEVMSMDHDHTGQLIFCGDTLGYVYSVSMNSRTGALSRSHRHRSSSRKSPVTTVQYRSFSLLARGPVLLTCTQDGNLTFFSVSLEVQGYLTLRCSLKLTPRIYSIQASFCPLLSLKKGEYIVAGSEDTNVYFYDLTRPKHTCVNKLQGHRFPVIGVTWNHGENLLASSDLYGTVIVWKRSKTS 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7862574 7869709 + Conep10aG0113600.1 Cone10ag1107 446905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1107 487 Pfam WD domain, G-beta repeat 445 481 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 Pfam WD domain, G-beta repeat 213 248 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 MobiDBLite consensus disorder prediction 1 34 - -
Cone10ag1107 487 Gene3D - 405 487 IPR015943 GO:0005515(InterPro)
Cone10ag1107 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 253 - -
Cone10ag1107 487 Gene3D - 264 401 IPR015943 GO:0005515(InterPro)
Cone10ag1107 487 PANTHER WD REPEAT PROTEIN 26-RELATED 154 484 IPR051350 GO:0005634(PANTHER)|GO:1990841(PANTHER)
Cone10ag1107 487 ProSitePatterns Trp-Asp (WD) repeats signature. 236 250 IPR019775 -
Cone10ag1107 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 450 487 - -
Cone10ag1107 487 SMART WD40_4 210 249 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 SMART WD40_4 337 385 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 SMART WD40_4 395 438 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 SMART WD40_4 252 291 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 SMART WD40_4 443 482 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 SMART WD40_4 166 206 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 MobiDBLite consensus disorder prediction 129 152 - -
Cone10ag1107 487 MobiDBLite consensus disorder prediction 127 156 - -
Cone10ag1107 487 MobiDBLite consensus disorder prediction 9 31 - -
Cone10ag1107 487 Gene3D - 167 263 IPR015943 GO:0005515(InterPro)
Cone10ag1107 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 487 IPR001680 GO:0005515(InterPro)
Cone10ag1107 487 SUPERFAMILY WD40 repeat-like 174 484 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1107 K24739 - - csv:101204649 768.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1107 Cone-Chr10:7862574 Cone4ag1824 Cone-Chr4:13182715 6.44E-07 dispersed
Cone10ag1107 Cone-Chr10:7862574 Cone3ag1222 Cone-Chr3:30974236 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g9 . Blo15g00678 Bda06g00950 . . . . . . . . Cma20g00821 . Car20g00708 . . . . . . . . . . . . . . . . . . . Cone3ag1222 Cone10ag1107 Lsi10g00404 . Chy11g00347 . . . . . . . . . Sed05g3536 . Cmo20g00830 . . . . Cpe16g00266 . Bhi10g01963 Tan05g1257 Cmetu11g1123 . Hepe08g0987 . . . . . . . . . . Csa02g01296 . Cme11g00157
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010476 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 32