Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1108 ATGGGAAAAAATAAGAGAAAGAAAGAGGTAGGCGAAGAGGGAGCTGCTGCCAGTGATCACTCCCCCTCCACTGTGTTCGTCTCTAACTTGCCCTACTCCTTCACTAACTCTCAGCTTGAAGAAACGTTCAGCGATGTCGGTCCAGTCAGGCGGTGCTTCATGGTTACTGAAAAGGGATCAACTAAGCACCGAGGTTTCAGTTTTGTGCAATTTGCTATTACTGAAGATGCAAATCGTGCAATTGAACTGAAGAATGGTTCATCAGTGGGCGGACGCAAAGTTGCTGTCAAACATGCAATGCATCGAGCACCCCTACAGCAGCGCCGATCGAAGGAAAATCAAGATAGTACTCTGAAGTCGAAGAGTGATGTAAGGGGTGACATCTCAAAGGCAGAGAAGATTGTTGCTTCAGACTTAGAGGAAAGAGGAAAGCACGTGGAGACTGGGAAAGGAGCCCTAGTTCCGAGTGACTCAGTAGATGGAGGTGGCTTAGCAAATCAAGGGAAGCCTGTAAAAGTTAGGAAAGCAGCACCAGGTCTGAGTGATTCGGCTGAGAAAGGGAAGTGGGTAGAACCAGGGAAAGCAACTCTAGCTCGGGTTGATTCAGCAAAGAAATCTGGTTCAGAAAAGCAAAGGGTTGCTAGAACTGTTGTTTTTGGTGGTCTTCTCAATGCTGAAGTGGCAGAAGCTGTCCATAACAGAGCTAGGGAGATTGGTATTGTTTGTTCTGTAATGTATCCTCTTCCAAAAGAAGAATTGCGCCAGCATGGTCTTATGCAAGATGGGTGCAGAATGGACGCTTCAGCTGTACTTTTTACAAGTGTGAAATCCGCTTGTGCTGCTGTTGCAATGCTACACCAGAAAGAGGTTAAAGAGGGAACTGTGTGGGCCCGTCAACTTGGTGGAGAGGGATCTAAAACTCAGAAATGGAAACTTATTGTTAGAAATCTTCCTTTCAAGGCCAAAGAGAATGAGATAAAGGAAATGTTTTCATCTACCGGGTTTGTCTGGGACGTGTTCATTCCCCATAAGTCTGAGGAGGGATTATCAAAGGGATTTGCATTTGTCAAATTTACATGCAAACAAGATGCAGACAATGTGATCAAGAAGTTTAATGGGCAAAAGTTCGGTAAAAGACCAATAGCAGTGGACTGGGCAATTCCAAAGAAAGTATATAGCAGTGGTGCTAGTGGCTCTCTTGCCCCAGGAGAAGGGCAAGGAAATGAAAGCGAAGAGGATGGTAACAGCAGTAGTGTTGATAGTGCTTCAGATGATGATTCCGTTGTAGACGACGAAGGCCTGCCTACAACAGCGGCTGATTTTGACGAGGAAGCTGACATAGCAAGAAAAGTCCTAAAAAACTTGATAGCATCTTCTGAAAAAGAAACCCTACCTTCTCTCAATGATGGTCCCATGTCATTCAAGAATAATGAGGAGCTAGAGGTTCCCAAAACTGTTGACTTACCAGTTAACTTTTTTGATGCGTCAGCGACAGTTAATACTGGACAATCAGATGAAAATACCAAAAATCTAAAACGGACGGATGATGAAGATAGTTTACAGAGGACAATTTTCATAAGCAATATTCCTTTTGAATTTGACAATGAAGAACTAAAGCAAAGATTTTCTGGGTTTGGTGAAGTTTTATCCTTTGTCCCTGTACTTCATCCTGTGACCAAGCGACTTAAGGGAACCGGTTTTCTAAAGTTTAAAACAATAGATGCTGCTACTTCAGCTGTTTCAGCTGCAAATACTGAATCTGGTTTGGGAATTTTTCTGAAAGGTCGGCAGCTGACAGTATTGAAGGCTTTGGATAAGAAATCAGCTCATAATAAGGAATTGGAGACGTCCAAAAATGAAAATCAGGATCATCGCAATCTTAACCTAGCAAAGGAAGGTCTGATAGTTGAGGGGACCCCAGCTGCTGAAGGAGTTTCAGCTAGTGATATGTTGAAACGCCAAACGCTTGAGAGGTCGAAGATGACTAAGCTACAATCTCCAAATTTTCATGTTTCGAGGACTAGGCTTGTTATATACAATTTACCAAAATCAATGAATGAGAAGGCACTCAAAAAGCTTTTAATTGAAGCAGTTATCTCACGAGCTTCCAAGCAAAAGCCTGTCATTCGGCAGATAAAGTTGTTGAATAATATGAGGAATAGTAAGATCACAACAAAGAACCACTCACGTGGAGTTGCTTTCATTGAGTTTTCCGAACACCAGCATGCGCTTGTCGCCCTGAGAGTTCTCAACAATAATCCTGAAACTTTTGGTCCTGAGCATCGTCCAATTGTGGAGTTTGCTGTTGATAATGTCCAAACATTGAAAATACGGAAATCTAAGCTTCAAGCTCAGCAGCAGAATAATGATAATGACAATAAAGATGAGCAGCAAAATTTCGAGGCGCATAAAAAAGATATCAAATCTACTAAGAAAGAGAATTTGAGAAAACGGAAACCCGTTGGTGATCATGATAAGCCATTTAAGGATCCCATACCAAATAAAGATCGAGCAGAAACCCATAAGGAATCCAGAGGATTTGCCAAAGAACGAATGGCCGTTAAGAAGCAGAAAACAAACCCAGGAAAAGAGTTTTCTCGGCAAGGAAAATCAGTGGGCCCCACAGAGAAGAAGCCTGTTCACAATCCTCGAGATAATGAGATCAATGGTAGCAGATCACTTCGAGGGTCTTCTGACAAATATGATACACAACATGAAAAGAGAAAGTTTCAAGACAGATCAGTAAGTCATGAGAATACAGAAGAAAATGCAAAGAGAAAAAGGTCGAAAAAGAACAAGGATCCAATTGGGCGAGATTCAGTCGACAAACTTGACATGTTAATCGAACAATACCGATCCAAGTTTTCGAATCTGAGTTCTGATGGAGAAAAGAAGAGTGTTAGACAGGTTAGGAAATGGTACCAATCATAA 2931 42.07 MGKNKRKKEVGEEGAAASDHSPSTVFVSNLPYSFTNSQLEETFSDVGPVRRCFMVTEKGSTKHRGFSFVQFAITEDANRAIELKNGSSVGGRKVAVKHAMHRAPLQQRRSKENQDSTLKSKSDVRGDISKAEKIVASDLEERGKHVETGKGALVPSDSVDGGGLANQGKPVKVRKAAPGLSDSAEKGKWVEPGKATLARVDSAKKSGSEKQRVARTVVFGGLLNAEVAEAVHNRAREIGIVCSVMYPLPKEELRQHGLMQDGCRMDASAVLFTSVKSACAAVAMLHQKEVKEGTVWARQLGGEGSKTQKWKLIVRNLPFKAKENEIKEMFSSTGFVWDVFIPHKSEEGLSKGFAFVKFTCKQDADNVIKKFNGQKFGKRPIAVDWAIPKKVYSSGASGSLAPGEGQGNESEEDGNSSSVDSASDDDSVVDDEGLPTTAADFDEEADIARKVLKNLIASSEKETLPSLNDGPMSFKNNEELEVPKTVDLPVNFFDASATVNTGQSDENTKNLKRTDDEDSLQRTIFISNIPFEFDNEELKQRFSGFGEVLSFVPVLHPVTKRLKGTGFLKFKTIDAATSAVSAANTESGLGIFLKGRQLTVLKALDKKSAHNKELETSKNENQDHRNLNLAKEGLIVEGTPAAEGVSASDMLKRQTLERSKMTKLQSPNFHVSRTRLVIYNLPKSMNEKALKKLLIEAVISRASKQKPVIRQIKLLNNMRNSKITTKNHSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFAVDNVQTLKIRKSKLQAQQQNNDNDNKDEQQNFEAHKKDIKSTKKENLRKRKPVGDHDKPFKDPIPNKDRAETHKESRGFAKERMAVKKQKTNPGKEFSRQGKSVGPTEKKPVHNPRDNEINGSRSLRGSSDKYDTQHEKRKFQDRSVSHENTEENAKRKRSKKNKDPIGRDSVDKLDMLIEQYRSKFSNLSSDGEKKSVRQVRKWYQS 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7874223 7883200 + Conep10aG0113800.1 Cone10ag1108 446906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1108 976 Gene3D - 291 423 IPR012677 -
Cone10ag1108 976 CDD RRM4_RBM28_like 674 771 - -
Cone10ag1108 976 MobiDBLite consensus disorder prediction 816 863 - -
Cone10ag1108 976 PANTHER RNA-BINDING MOTIF PROTEIN 14B 20 976 IPR051945 GO:0003729(PANTHER)
Cone10ag1108 976 MobiDBLite consensus disorder prediction 150 186 - -
Cone10ag1108 976 MobiDBLite consensus disorder prediction 1 15 - -
Cone10ag1108 976 MobiDBLite consensus disorder prediction 898 949 - -
Cone10ag1108 976 Coils Coil 607 627 - -
Cone10ag1108 976 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 522 605 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 MobiDBLite consensus disorder prediction 396 440 - -
Cone10ag1108 976 CDD RRM2_RBM28_like 311 387 - -
Cone10ag1108 976 SUPERFAMILY RNA-binding domain, RBD 22 293 IPR035979 GO:0003676(InterPro)
Cone10ag1108 976 Gene3D - 2 134 IPR012677 -
Cone10ag1108 976 MobiDBLite consensus disorder prediction 794 809 - -
Cone10ag1108 976 SUPERFAMILY RNA-binding domain, RBD 305 408 IPR035979 GO:0003676(InterPro)
Cone10ag1108 976 MobiDBLite consensus disorder prediction 399 423 - -
Cone10ag1108 976 MobiDBLite consensus disorder prediction 1 25 - -
Cone10ag1108 976 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 674 782 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 MobiDBLite consensus disorder prediction 100 124 - -
Cone10ag1108 976 CDD RRM1_RBM28_like 24 102 - -
Cone10ag1108 976 Pfam RNA recognition motif 312 381 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 Pfam RNA recognition motif 25 94 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 Pfam RNA recognition motif 524 585 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 Gene3D - 673 768 IPR012677 -
Cone10ag1108 976 Gene3D - 508 613 IPR012677 -
Cone10ag1108 976 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 MobiDBLite consensus disorder prediction 105 124 - -
Cone10ag1108 976 Coils Coil 765 813 - -
Cone10ag1108 976 CDD RRM3_RBM28_like 522 603 - -
Cone10ag1108 976 SMART rrm1_1 311 384 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 SMART rrm1_1 24 97 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 SMART rrm1_1 523 601 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 SMART rrm1_1 675 766 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 MobiDBLite consensus disorder prediction 424 439 - -
Cone10ag1108 976 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723(InterPro)
Cone10ag1108 976 MobiDBLite consensus disorder prediction 780 976 - -
Cone10ag1108 976 FunFam RNA-binding motif protein 28 673 768 - -
Cone10ag1108 976 SUPERFAMILY RNA-binding domain, RBD 522 752 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1108 K14573 - - cit:102622608 1023.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1108 Cone-Chr10:7874223 Cone13ag0476 Cone-Chr13:5197043 4.27E-11 dispersed
Cone11ag1045 Cone-Chr11:8248307 Cone10ag1108 Cone-Chr10:7874223 5.12E-09 transposed
Cone10ag1108 Cone-Chr10:7874223 Cone3ag1223 Cone-Chr3:30993176 0 wgd
Cone10ag1108 Cone-Chr10:7874223 Cone8ag1145 Cone-Chr8:10021954 1.79E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g4 . . . . . . Bma05g00433 . . . Cma02g00374 Cma20g00823 Car02g00241 Car20g00709 . . . . . . . . . . . . . . . . . Cone12ag1171 Cone8ag1218 Cone3ag1223 Cone10ag1108 Lsi10g00402 . Chy11g00350 . . . . . . . . . Sed02g0459 Cmo02g00381 Cmo20g00834 . . . . Cpe16g00265 Cpe05g01281 Bhi10g01966 Tan05g1259 Cmetu05g0753 . Hepe08g0990 . . . . . . . . . . Csa02g01292 . Cme11g00154
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34