Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1130 ATGCCCCGGCCTTGTTTCCACAAGCTTATTCTACCATCTACCATCCACGCTAAGCAATTGAGAATTCCCGAAAACTTTATCAGGAAAATTAGGGATGACCTTTCTGCAGTTGCTAAACTTGCTATCCCAGATGGTCATGTTTGGCATGTTGGGCTGAAGAAACATGATAACAGATATTGCTTTCAAGATGGTTGGTCTGAATTTGTAGACCGTTATTCTATTCGTGTTGGGTACCTCTTAGTATTCCGATATGAAGGGCATTCAGCTTTCAGTGTTTTTATCTTTAATCTCATTCCTTCTGAAATAAACTATCAATCTGCTGCTCTTAGTAACTCTCAAGGCACCAATTATTATAACCATAATCATGTTTTTGAAGAAATGGAAGATGATGACTTAGTTGACCTAATGCCTTCATCAAATCCTTCTGCTAATTCCGGTTCTTTGAGAAACAAGCTTTTGGGTGACCGTGGAAATCAACTGATTTCCAACAAACTTGGAAATCCTCTACCGCAAAATTTGCTCAATGGATCAAAGCTTAAGAATTGTGTGAATTGGAATGATGAATGGAACTTGCATTTATCTAGGGCGGGTGGTGATAATTTTCCAGCAGATTTACAATCTAGTCGAGAAATTGGTGTTCCAGATAGTAAAAGATCAGTGGACAAGGTGAGATCGCATGCTCCGGATGATGATTTACCAAAAATAAAATTGAGCGCGAAAAAGAAGCGGAAAATTGCTTCTGATCAAGGGCAACATTCATCTACTCAAAATGAGGAGGAAGGAGATATGAGCTTTAGGTTTTACGAAAGTGCTTCTGTTCGAAAGAGAACAGTGACAGCCGAAGAAAGGGAAAGGACTGTTAATGCAGCTAAAACTTTTGAGCCCGCAAATCCATTTTGCCGGGTTGTTTTGCGACCATCCTATCTCTACAAAGGTTGTATAATGTATTTACCATCTTGCTTTGCTGAAAAGAATTTAAGTGGGGTTTCCGGATTCATCAAACTTCAGATCTACAATGGAAGGCAGTGGCCCGTCAGATGCCGTTATAATGGTGGAGGTGGAGCTAAATTAAGCCAAGGATGGTATGAATTCTGCCTCGAGAACAATTTAGGGGAAGGAGATGTCTGTGTCTTTGAGTCGCTTCGGACGAGTGAAATTATACTTAAAGTCACAATGTTCCGAGTCTCTGCAGATAATGGACCCATTAACCTGCCGCACCCTTTGCAGCAAAGTGTTGGCCAATTTAGATTGATTAGAAGTTAA 1263 40.3 MPRPCFHKLILPSTIHAKQLRIPENFIRKIRDDLSAVAKLAIPDGHVWHVGLKKHDNRYCFQDGWSEFVDRYSIRVGYLLVFRYEGHSAFSVFIFNLIPSEINYQSAALSNSQGTNYYNHNHVFEEMEDDDLVDLMPSSNPSANSGSLRNKLLGDRGNQLISNKLGNPLPQNLLNGSKLKNCVNWNDEWNLHLSRAGGDNFPADLQSSREIGVPDSKRSVDKVRSHAPDDDLPKIKLSAKKKRKIASDQGQHSSTQNEEEGDMSFRFYESASVRKRTVTAEERERTVNAAKTFEPANPFCRVVLRPSYLYKGCIMYLPSCFAEKNLSGVSGFIKLQIYNGRQWPVRCRYNGGGGAKLSQGWYEFCLENNLGEGDVCVFESLRTSEIILKVTMFRVSADNGPINLPHPLQQSVGQFRLIRS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8141996 8145564 + Conep10aG0116200.1 Cone10ag1130 446928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1130 420 PANTHER B3 DOMAIN-CONTAINING 3 381 IPR050655 -
Cone10ag1130 420 MobiDBLite consensus disorder prediction 205 261 - -
Cone10ag1130 420 SUPERFAMILY DNA-binding pseudobarrel domain 293 395 IPR015300 -
Cone10ag1130 420 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Cone10ag1130 420 CDD B3_DNA 4 96 IPR003340 GO:0003677(InterPro)
Cone10ag1130 420 ProSiteProfiles B3 DNA-binding domain profile. 300 396 IPR003340 GO:0003677(InterPro)
Cone10ag1130 420 MobiDBLite consensus disorder prediction 214 248 - -
Cone10ag1130 420 Gene3D - 1 97 IPR015300 -
Cone10ag1130 420 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677(InterPro)
Cone10ag1130 420 SMART B3_2 6 98 IPR003340 GO:0003677(InterPro)
Cone10ag1130 420 SMART B3_2 300 396 IPR003340 GO:0003677(InterPro)
Cone10ag1130 420 Pfam B3 DNA binding domain 8 93 IPR003340 GO:0003677(InterPro)
Cone10ag1130 420 Pfam B3 DNA binding domain 302 395 IPR003340 GO:0003677(InterPro)
Cone10ag1130 420 CDD B3_DNA 298 394 IPR003340 GO:0003677(InterPro)
Cone10ag1130 420 Gene3D - 277 397 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1130 Cone-Chr10:8141996 Cone3ag1122 Cone-Chr3:29806884 5.17E-58 dispersed
Cone10ag1130 Cone-Chr10:8141996 Cone10ag1131 Cone-Chr10:8145632 5.20E-10 tandem
Cone10ag1130 Cone-Chr10:8141996 Cone12ag1121 Cone-Chr12:9050836 3.69E-135 wgd
Cone10ag1130 Cone-Chr10:8141996 Cone3ag1121 Cone-Chr3:29791630 3.15E-294 wgd
Cone10ag1130 Cone-Chr10:8141996 Cone8ag1166 Cone-Chr8:10086216 2.48E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44243 PF13177 DNA_pol3_delta2 2.40E-30 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1130 - - - 0.0