Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag1130 | ATGCCCCGGCCTTGTTTCCACAAGCTTATTCTACCATCTACCATCCACGCTAAGCAATTGAGAATTCCCGAAAACTTTATCAGGAAAATTAGGGATGACCTTTCTGCAGTTGCTAAACTTGCTATCCCAGATGGTCATGTTTGGCATGTTGGGCTGAAGAAACATGATAACAGATATTGCTTTCAAGATGGTTGGTCTGAATTTGTAGACCGTTATTCTATTCGTGTTGGGTACCTCTTAGTATTCCGATATGAAGGGCATTCAGCTTTCAGTGTTTTTATCTTTAATCTCATTCCTTCTGAAATAAACTATCAATCTGCTGCTCTTAGTAACTCTCAAGGCACCAATTATTATAACCATAATCATGTTTTTGAAGAAATGGAAGATGATGACTTAGTTGACCTAATGCCTTCATCAAATCCTTCTGCTAATTCCGGTTCTTTGAGAAACAAGCTTTTGGGTGACCGTGGAAATCAACTGATTTCCAACAAACTTGGAAATCCTCTACCGCAAAATTTGCTCAATGGATCAAAGCTTAAGAATTGTGTGAATTGGAATGATGAATGGAACTTGCATTTATCTAGGGCGGGTGGTGATAATTTTCCAGCAGATTTACAATCTAGTCGAGAAATTGGTGTTCCAGATAGTAAAAGATCAGTGGACAAGGTGAGATCGCATGCTCCGGATGATGATTTACCAAAAATAAAATTGAGCGCGAAAAAGAAGCGGAAAATTGCTTCTGATCAAGGGCAACATTCATCTACTCAAAATGAGGAGGAAGGAGATATGAGCTTTAGGTTTTACGAAAGTGCTTCTGTTCGAAAGAGAACAGTGACAGCCGAAGAAAGGGAAAGGACTGTTAATGCAGCTAAAACTTTTGAGCCCGCAAATCCATTTTGCCGGGTTGTTTTGCGACCATCCTATCTCTACAAAGGTTGTATAATGTATTTACCATCTTGCTTTGCTGAAAAGAATTTAAGTGGGGTTTCCGGATTCATCAAACTTCAGATCTACAATGGAAGGCAGTGGCCCGTCAGATGCCGTTATAATGGTGGAGGTGGAGCTAAATTAAGCCAAGGATGGTATGAATTCTGCCTCGAGAACAATTTAGGGGAAGGAGATGTCTGTGTCTTTGAGTCGCTTCGGACGAGTGAAATTATACTTAAAGTCACAATGTTCCGAGTCTCTGCAGATAATGGACCCATTAACCTGCCGCACCCTTTGCAGCAAAGTGTTGGCCAATTTAGATTGATTAGAAGTTAA | 1263 | 40.3 | MPRPCFHKLILPSTIHAKQLRIPENFIRKIRDDLSAVAKLAIPDGHVWHVGLKKHDNRYCFQDGWSEFVDRYSIRVGYLLVFRYEGHSAFSVFIFNLIPSEINYQSAALSNSQGTNYYNHNHVFEEMEDDDLVDLMPSSNPSANSGSLRNKLLGDRGNQLISNKLGNPLPQNLLNGSKLKNCVNWNDEWNLHLSRAGGDNFPADLQSSREIGVPDSKRSVDKVRSHAPDDDLPKIKLSAKKKRKIASDQGQHSSTQNEEEGDMSFRFYESASVRKRTVTAEERERTVNAAKTFEPANPFCRVVLRPSYLYKGCIMYLPSCFAEKNLSGVSGFIKLQIYNGRQWPVRCRYNGGGGAKLSQGWYEFCLENNLGEGDVCVFESLRTSEIILKVTMFRVSADNGPINLPHPLQQSVGQFRLIRS | 420 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8141996 | 8145564 | + | Conep10aG0116200.1 | Cone10ag1130 | 446928 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag1130 | 420 | PANTHER | B3 DOMAIN-CONTAINING | 3 | 381 | IPR050655 | - | |
Cone10ag1130 | 420 | MobiDBLite | consensus disorder prediction | 205 | 261 | - | - | |
Cone10ag1130 | 420 | SUPERFAMILY | DNA-binding pseudobarrel domain | 293 | 395 | IPR015300 | - | |
Cone10ag1130 | 420 | SUPERFAMILY | DNA-binding pseudobarrel domain | 3 | 96 | IPR015300 | - | |
Cone10ag1130 | 420 | CDD | B3_DNA | 4 | 96 | IPR003340 | GO:0003677(InterPro) | |
Cone10ag1130 | 420 | ProSiteProfiles | B3 DNA-binding domain profile. | 300 | 396 | IPR003340 | GO:0003677(InterPro) | |
Cone10ag1130 | 420 | MobiDBLite | consensus disorder prediction | 214 | 248 | - | - | |
Cone10ag1130 | 420 | Gene3D | - | 1 | 97 | IPR015300 | - | |
Cone10ag1130 | 420 | ProSiteProfiles | B3 DNA-binding domain profile. | 5 | 98 | IPR003340 | GO:0003677(InterPro) | |
Cone10ag1130 | 420 | SMART | B3_2 | 6 | 98 | IPR003340 | GO:0003677(InterPro) | |
Cone10ag1130 | 420 | SMART | B3_2 | 300 | 396 | IPR003340 | GO:0003677(InterPro) | |
Cone10ag1130 | 420 | Pfam | B3 DNA binding domain | 8 | 93 | IPR003340 | GO:0003677(InterPro) | |
Cone10ag1130 | 420 | Pfam | B3 DNA binding domain | 302 | 395 | IPR003340 | GO:0003677(InterPro) | |
Cone10ag1130 | 420 | CDD | B3_DNA | 298 | 394 | IPR003340 | GO:0003677(InterPro) | |
Cone10ag1130 | 420 | Gene3D | - | 277 | 397 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag1130 | Cone-Chr10:8141996 | Cone3ag1122 | Cone-Chr3:29806884 | 5.17E-58 | dispersed | |
Cone10ag1130 | Cone-Chr10:8141996 | Cone10ag1131 | Cone-Chr10:8145632 | 5.20E-10 | tandem | |
Cone10ag1130 | Cone-Chr10:8141996 | Cone12ag1121 | Cone-Chr12:9050836 | 3.69E-135 | wgd | |
Cone10ag1130 | Cone-Chr10:8141996 | Cone3ag1121 | Cone-Chr3:29791630 | 3.15E-294 | wgd | |
Cone10ag1130 | Cone-Chr10:8141996 | Cone8ag1166 | Cone-Chr8:10086216 | 2.48E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44243 | PF13177 | DNA_pol3_delta2 | 2.40E-30 | CL0023 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag1130 | - | - | - | 0.0 |