Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1142 ATGGGGTTAGACCTTCACTTCAAACGCTTACTCCTCTTAAACCCACACCCTCCTAAACCCCAGCTCAAACGCTTCAACCCCTCCACTCTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGATCCATCATCATCGCCATCAAACCTATCAATCTCAACCGTGGTTTCAGTCCTGATCCATCACCGTTCAAAATCCCGTTGGAGATACCTCAACTCTCTCTGCCGTAACGGCTTCTCCCCCGATGAGTTTTCCCAAATTACCCTTCACGTCAAGAACAATCCCCATCTCGCCCTCCGCTTCTTCCAGTGGACCCACAAAAAATCCCTCTGCAACCACAACCTTCTCTCTTACTCCACCCTCATTCACGTCCTCGCTAGGTCCCGCCTCAAATCTGAAGCTCTGAATCTCATTAAAACCGCCATTCGAGCCACAAAGCTCAAGAACAATGAAGAAGAAGGAGAAGAATCAGAGTCCTCTCCATTGAAGCTGTTTGAAACCCTCGTGAAAACCTACAAGCAATGTGGGTCAGCTCCATTCGTGTTCGATTTGCTAATCAGAGCCCTTCTAGATTCGAAAAAGATCGACCCAGCGATCGAGATTGTAAGAATGTTAAGGTCTCGTGGAATTAGTCCTCAAATCGGCACATTAAACTCATTGATTTCAGAGGTTTCAAGATGTCAAGGGGCTAATCAAGGGTATGAAATTTACAGAGAAGTTTTTAGACCTTTTGATGAAGATTATGAAATTAAAAATGGAAATGTGAAAAGGGTTTTTGTTAACGTTAGTCCAAATGTCCATACTTTTAATGCTTTAATGGTGTGTTTTTATCAACATGGAAATTTTGAGAAGGTGAAGGAGATTTGGAATCAAATGGGTGAATCAAATTCGGTTCCGAATTGTTATAGTTACAGCATTTTAATGGAGGCTTTCTGCGTGGAAGGAAGAATGGAAGAAGCTGAAGAATTATGGGAAGAAATGAGGGGTAAGAATATAGAGCCCGATATTACAGCTTATAATACAATGATTAATGGGTTTTGTCAAAATGGAGAGGTTGTAAAAGGAGAAGAGCTTTTTAGAGAGTTGGAGTTAAGTGGAATAGAGAGCACCCTCACAACTTTGGGGCACCTCATTAATGGCTACTTTAAGATTGGGGATGTAGAATCTGCATTATTGGTTTATAAAGATATGTGTAGGAATAAGGATTTTAGGTATAATGACAACAACCCTTTGGTTTTAGAGGGGTTGGTTAGAGGTCTCTGTGTTAAGAAGAGGGTTCTAGAGGGTTTGGAGGTTTTCCGAGGCAGTTCCGATCCGGTTTGTTCTGATTTTCATCCGACGAGGAAGAGTTATGAGTTGTTGGTCAAAGGGTTGTGTGAAGAAGGGAAGGTTGAAGAAGCACTTGAGCTTCAGGTTGAGATGGTGGGGAAAGGGTTTAGACCTGATTTTGAGACTTATAGTGCTTTTATTGATTGCTATATGAAACAGGGGAATGATGAAATGGTGGAGAAGTTGAGGAATGAAATGCTTGAGGCTCAGATTAATTGA 1551 41.78 MGLDLHFKRLLLLNPHPPKPQLKRFNPSTLFSSSSSSSSSSSDPSSSPSNLSISTVVSVLIHHRSKSRWRYLNSLCRNGFSPDEFSQITLHVKNNPHLALRFFQWTHKKSLCNHNLLSYSTLIHVLARSRLKSEALNLIKTAIRATKLKNNEEEGEESESSPLKLFETLVKTYKQCGSAPFVFDLLIRALLDSKKIDPAIEIVRMLRSRGISPQIGTLNSLISEVSRCQGANQGYEIYREVFRPFDEDYEIKNGNVKRVFVNVSPNVHTFNALMVCFYQHGNFEKVKEIWNQMGESNSVPNCYSYSILMEAFCVEGRMEEAEELWEEMRGKNIEPDITAYNTMINGFCQNGEVVKGEELFRELELSGIESTLTTLGHLINGYFKIGDVESALLVYKDMCRNKDFRYNDNNPLVLEGLVRGLCVKKRVLEGLEVFRGSSDPVCSDFHPTRKSYELLVKGLCEEGKVEEALELQVEMVGKGFRPDFETYSAFIDCYMKQGNDEMVEKLRNEMLEAQIN 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8260022 8262281 + Conep10aG0117400.1 Cone10ag1142 446940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1142 516 Gene3D Tetratricopeptide repeat domain 409 516 IPR011990 GO:0005515(InterPro)
Cone10ag1142 516 Gene3D Tetratricopeptide repeat domain 252 408 IPR011990 GO:0005515(InterPro)
Cone10ag1142 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Cone10ag1142 516 Pfam PPR repeat 376 401 IPR002885 -
Cone10ag1142 516 Pfam PPR repeat 118 140 IPR002885 -
Cone10ag1142 516 Pfam PPR repeat 269 297 IPR002885 -
Cone10ag1142 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Cone10ag1142 516 Gene3D Tetratricopeptide repeat domain 88 244 IPR011990 GO:0005515(InterPro)
Cone10ag1142 516 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 24 512 IPR051222 -
Cone10ag1142 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Cone10ag1142 516 Pfam PPR repeat family 451 496 IPR002885 -
Cone10ag1142 516 Pfam PPR repeat family 307 348 IPR002885 -
Cone10ag1142 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cone10ag1142 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Cone10ag1142 516 SUPERFAMILY HCP-like 275 434 - -
Cone10ag1142 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 516 IPR002885 -
Cone10ag1142 516 NCBIfam pentatricopeptide repeat 339 369 IPR002885 -
Cone10ag1142 516 NCBIfam pentatricopeptide repeat 268 302 IPR002885 -
Cone10ag1142 516 NCBIfam pentatricopeptide repeat 377 401 IPR002885 -
Cone10ag1142 516 NCBIfam pentatricopeptide repeat 451 483 IPR002885 -
Cone10ag1142 516 NCBIfam pentatricopeptide repeat 303 337 IPR002885 -
Cone10ag1142 516 NCBIfam pentatricopeptide repeat 486 513 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1142 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1142 Cone-Chr10:8260022 Cone3ag1132 Cone-Chr3:29909707 4.41E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g536 Blo02g00788 . . Bda08g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1132 Cone10ag1142 Lsi10g00648 . . . . . . . . . . . . . . . . . . . . Bhi10g02041 . . . . . . . . . . . . . . . . Cme11g00226
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012888 2 1 1 1 0 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 27