Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone10ag1148 ATGGAGAATTGTATTAGTGGCGAAGAGGACTACTACGACTCCGATCAGGACTCGCTTGACGGGCTCGAGAATGATGAGCCTGACGATCAGTTGCTAGTTTCCAAGGGTCCCACGACTAAGATAATTACGAAGGAATCTCTTCTAGCTGCTCAGAGGGAGGATTTACAAAGAGTAATGGAGTTGTTATCCCTGAGAGAGTACCATGCCCGGACTTTACTCATACACTACCGCTGGGATGTTGAGGCGCTAGTTGCTGTGCTTGTAGATAAGGGGAAGGCTCACTTGTTTTCTGTAGCAGGTGTTACTGTGGTTGAGAATCAAAATCGTGACCCTTCAGAAACATCTTCCACGGTGATGTGTGAGATTTGTATAGAGGAAGTACATAGCAAGGAAGCAACTAGAATGGATTGTGGCCATTGCTATTGCAACGATTGTTGGACAGAGCATTTTGTTGTGAAGATAAACGAAGGTCAAAGTCGGCGTATCAGGTGCATGGCACACAAATGCAATGCTATCTGTGACGAAGCTGTTGTTAGAAATCTAGTCAGCAAAAAGTATCCTATTCTTGCAGAGAAATTTGATCGTTTTCTTCTTGAGTCATACATTGAAGATAATAAAAGGGTCAAGTGGTGCCCTAGTACTCCTCATTGTGGGAATGCAATACGAGTGGAGGATGATGAATTTTGTGAAATAGAATGCTCTTGTGGTTTGCAGTTTTGTTTTGGTTGCTTATCAGAAGCACATTCCCCATGTACATGCTTGATGTGGGAGCTCTGGACAAAGAAGTGCCGAGATGAATCTGAAACAGTGAATTGGATTACAGTTCATACCAAGCCTTGCCCCAAGTGTCTTAAACCTGTGGAGAAGAATGGTGGCTGCAACCTTGTTAGCTGTATTTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGAAGAGACCATACATGGTCGAGCATTTCTGGTCACAGTTGTGGTCGTTATAAAGAACAATCAGAGAAAAAAGCTGAAAGGGCAAAGAGGGATTTGTACCGCTATATGCATTATCATAACCGTTACAAAGCCCATACAGATTCTTTCAAGCTTGAAAGTAAATTGAAGGAGACCATACAAGTGAAGGTGTCCGTTTCTGAAGAGAAGGAATCCACCCTCAGGGATTTCAGCTGGGTAAATAATGGACTCTACAGACTCTTCAGATCAAGGCGGGTTCTTTCATATTCATACCCATTTGCATTCTATATTTTTGGGGATGAACTTTTCAATGATGAGATGACAAATGAGGAAAGAGAGATTAAACAGCATTTATTTGAAGACCAGCAACAACAGCTCGAGGCAAATGTTGAGAAGCTATCCAAGTTTCTAGAAGAGCCTTTCGATCAGTACGAAAAAGATAAAGTAATGGAGATAAGAATGCAAGTCATCAATCTGTCTGCTATTACAGACACCCTTTGTAAGAAAATGTATGACTGCATTGAGAATGATTTATTCGAGTCTCTCCAGCTAGGAATCCACAATATTGCTCCCTACAGGTCGAAGGGAATAGAGCGAGCATTGGAACTTACAGCCTGTTGGGATAGTACATCAAATAGTACTGATAAATATCCACAATCGGATTGTGGCACAAGTGGAGGGTCATCGGAATGCGATCGACCTTCGGGCTCTGGAAGCTCGGTTGAGATTGGACGGCCTTCACGAAAGCGAGCCCGGAAGGATGTAGCAGGCAGCTTATTTGATCTAAACTTGCCGGCAGATCATGTAGCTGACAGGAACTGA 1776 43.3 MENCISGEEDYYDSDQDSLDGLENDEPDDQLLVSKGPTTKIITKESLLAAQREDLQRVMELLSLREYHARTLLIHYRWDVEALVAVLVDKGKAHLFSVAGVTVVENQNRDPSETSSTVMCEICIEEVHSKEATRMDCGHCYCNDCWTEHFVVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKKYPILAEKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEIECSCGLQFCFGCLSEAHSPCTCLMWELWTKKCRDESETVNWITVHTKPCPKCLKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEQSEKKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQVKVSVSEEKESTLRDFSWVNNGLYRLFRSRRVLSYSYPFAFYIFGDELFNDEMTNEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYEKDKVMEIRMQVINLSAITDTLCKKMYDCIENDLFESLQLGIHNIAPYRSKGIERALELTACWDSTSNSTDKYPQSDCGTSGGSSECDRPSGSGSSVEIGRPSRKRARKDVAGSLFDLNLPADHVADRN 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8302117 8306806 - Conep10aG0118000.1 Cone10ag1148 446946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone10ag1148 591 MobiDBLite consensus disorder prediction 527 571 - -
Cone10ag1148 591 FunFam RBR-type E3 ubiquitin transferase 249 497 - -
Cone10ag1148 591 SUPERFAMILY RING/U-box 272 314 - -
Cone10ag1148 591 Gene3D - 249 499 - -
Cone10ag1148 591 Pfam Ariadne domain 330 589 IPR045840 -
Cone10ag1148 591 CDD BRcat_RBR_ANKIB1 198 262 - -
Cone10ag1148 591 FunFam RBR-type E3 ubiquitin transferase 114 205 - -
Cone10ag1148 591 CDD RING-HC_RBR_TRIAD1 118 171 - -
Cone10ag1148 591 CDD Rcat_RBR_ARI1-like 274 327 - -
Cone10ag1148 591 MobiDBLite consensus disorder prediction 527 560 - -
Cone10ag1148 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 77 360 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone10ag1148 591 SMART ibrneu5 191 253 IPR002867 GO:0008270(InterPro)
Cone10ag1148 591 SMART ibrneu5 261 326 IPR002867 GO:0008270(InterPro)
Cone10ag1148 591 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Cone10ag1148 591 SUPERFAMILY RING/U-box 191 259 - -
Cone10ag1148 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 205 IPR013083 -
Cone10ag1148 591 MobiDBLite consensus disorder prediction 1 27 - -
Cone10ag1148 591 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Cone10ag1148 591 SUPERFAMILY RING/U-box 115 203 - -
Cone10ag1148 591 MobiDBLite consensus disorder prediction 1 28 - -
Cone10ag1148 591 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 50 84 IPR048962 -
Cone10ag1148 591 Pfam IBR domain 273 315 IPR054694 -
Cone10ag1148 591 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1148 Cone-Chr10:8302117 Cone15ag0588 Cone-Chr15:2993013 5.76E-54 dispersed
Cone10ag1148 Cone-Chr10:8302117 Cone3ag1137 Cone-Chr3:29958169 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone10ag1148 K11968 - csv:101205066 1034.63