Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone10ag1169 | ATGGTTGTCACCGTAAACCACTCAGACGAGGTTCAACCTACCGGAGATTCCATTTCTCATAAGCTCGACGCAAAAACTTCACTCTTCGGCTTAAGGCCCTACCTCCTGATCGGAATCTCCATCGCTGTAGCATGTTTAATCGCTGCCTTCCTTCTAATCTTCTTCTGCCTCTTCCGTACGAATCGGAGAAGCGCGAGAAAGCGTATAAAGGACCGGCCGAGTCAAAGCTGGGGATCGGCTCCGTTATTCTGTAAAGAGATCGAAGCTAGTCTTGATCGCACTAACAATGACGAGAAAGCGGAGGTCAAAATCGGAAACTTACAGAAGGTGGAGAAGGAAACAGAGGTGGTTGCGATCGAAGGAGGAAGAGATAAGGGGGAGAGTGACGTAGCAGGTGGTAGTTATACCGACGTGTCGGCGGAGGAGCAGAATATTGGATGGGGTCGGTGGTATAGCTTGAAGGAGCTGGAGGTTGCGACACGTCGGTTTTCGAAAGAGAATGTGATCGGTGAAGGTGGTTATGGAATCGTCTACAGAGGAGTTTTACCAGACGGTTCTGTAGTGGCTGTTAAAAATCTACTTGATAATAACAAGGGTCAGGCAGAGAAAGAGTTCGAGGTAGAAGTGGAGGCCATTGGAAAAGTAAGGCATAAGAACTTGGTTTGTCTACTAGGTTATTGTGCAGAAGGTGCTCAGAGGATGCTTGTGTATGAATTTGTTAACAATGGCAATTTGGAGCAATGGTTACATGGTGATGTAGGTCCTGTTAGTCCTCTAACATGGGACATTCGAATGAGGATTGCTGTTGGAACAGCAAAAGGGATAGCATATTTGCACGAAGGATTAGAACCTAAAGTCGTTCATCGAGACATAAAATCAAGTAACATTCTTCTTGATAGAAAATGGAATGCTAAAGTGTCCGATTTTGGACTGGCTAAGCTCTTAGGAACCGATGCAAGCTATGTAAAAACTCGTGTTATGGGCACATTTGGATATGTCTCTCCAGATTATGCAAGTACAGGTATGCTCAACGAGACGAATGATGTATATAGCTTCGGAATTCTTCTCGTGGAGATTATTACCGGAAGAAGTCCGATAGATTATTCTAGACCCGCTGGAGAGATGAACTTCGTCGATTGGTTTAAAAGCATGGTGGCAAGTAGACGTGGTGAAGAGGCGATAGACCCTCTGGTTGAGGCTCAACCCTCTTCAAGAGCTTTGAAACGTACATTACTAGTTTGTCTTCGCTGTATCGATATGGATCCTCATAAACGGCCAAAAATGGGCCAAATTGTTCATATGCTAGAGGGAGATGATTTCCCCTTCCGATCAGAACCTAGAATTGTCCGTGAAAGAGATTCTCATTGTTCTCGAGCAGAAATGTCGGACAAAGTTACGTTTCCATTGAAGCATGGTGCGGTGGGTGATATAGAGAGATCAGAAAGGAGATGA | 1452 | 45.04 | MVVTVNHSDEVQPTGDSISHKLDAKTSLFGLRPYLLIGISIAVACLIAAFLLIFFCLFRTNRRSARKRIKDRPSQSWGSAPLFCKEIEASLDRTNNDEKAEVKIGNLQKVEKETEVVAIEGGRDKGESDVAGGSYTDVSAEEQNIGWGRWYSLKELEVATRRFSKENVIGEGGYGIVYRGVLPDGSVVAVKNLLDNNKGQAEKEFEVEVEAIGKVRHKNLVCLLGYCAEGAQRMLVYEFVNNGNLEQWLHGDVGPVSPLTWDIRMRIAVGTAKGIAYLHEGLEPKVVHRDIKSSNILLDRKWNAKVSDFGLAKLLGTDASYVKTRVMGTFGYVSPDYASTGMLNETNDVYSFGILLVEIITGRSPIDYSRPAGEMNFVDWFKSMVASRRGEEAIDPLVEAQPSSRALKRTLLVCLRCIDMDPHKRPKMGQIVHMLEGDDFPFRSEPRIVRERDSHCSRAEMSDKVTFPLKHGAVGDIERSERR | 483 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8511197 | 8514229 | - | Conep10aG0120300.1 | Cone10ag1169 | 446967 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone10ag1169 | 483 | Pfam | Protein kinase domain | 164 | 433 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone10ag1169 | 483 | Gene3D | Transferase(Phosphotransferase) domain 1 | 240 | 444 | - | - | |
Cone10ag1169 | 483 | SUPERFAMILY | Protein kinase-like (PK-like) | 140 | 436 | IPR011009 | - | |
Cone10ag1169 | 483 | CDD | STKc_IRAK | 169 | 437 | - | - | |
Cone10ag1169 | 483 | ProSiteProfiles | Protein kinase domain profile. | 163 | 443 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone10ag1169 | 483 | FunFam | Putative receptor-like serine/threonine-protein kinase | 240 | 450 | - | - | |
Cone10ag1169 | 483 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 143 | 239 | - | - | |
Cone10ag1169 | 483 | SMART | serkin_6 | 163 | 442 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone10ag1169 | 483 | Gene3D | Phosphorylase Kinase; domain 1 | 135 | 239 | - | - | |
Cone10ag1169 | 483 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 286 | 298 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone10ag1169 | 483 | PANTHER | OS01G0323000 PROTEIN | 18 | 459 | IPR052232 | - | |
Cone10ag1169 | 483 | ProSitePatterns | Protein kinases ATP-binding region signature. | 169 | 191 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag1169 | Cone-Chr10:8511197 | Cone4ag1586 | Cone-Chr4:12122766 | 4.18E-176 | dispersed | |
Cone10ag1169 | Cone-Chr10:8511197 | Cone12ag1149 | Cone-Chr12:9172547 | 2.47E-231 | wgd | |
Cone10ag1169 | Cone-Chr10:8511197 | Cone3ag1161 | Cone-Chr3:30254998 | 0 | wgd | |
Cone10ag1169 | Cone-Chr10:8511197 | Cone8ag1197 | Cone-Chr8:10205338 | 3.14E-227 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81843 | PF00270 | DEAD | 8.20E-09 | CL0023 | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone10ag1169 | - | - | - | 0.0 |